Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS12935

Experiment: biofilm; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM;
2,861,503	+		LRK53_RS12925	0.82	-1.0
2,861,503	+		LRK53_RS12925	0.82	-0.5
2,861,503	+		LRK53_RS12925	0.82	+0.0
2,861,503	+		LRK53_RS12925	0.82	-0.6
2,861,504	-		LRK53_RS12925	0.82	+0.4
2,861,504	-		LRK53_RS12925	0.82	+1.6
2,861,504	-		LRK53_RS12925	0.82	+0.8
2,861,504	-		LRK53_RS12925	0.82	-0.2
2,861,504	-		LRK53_RS12925	0.82	+1.6
2,861,624	+		LRK53_RS12925	0.89	-1.8
2,861,624	+		LRK53_RS12925	0.89	-1.9
2,861,625	-		LRK53_RS12925	0.89	+0.5
2,861,625	-		LRK53_RS12925	0.89	+0.7
2,861,709	+				-1.1
2,861,818	+				-0.2
2,861,818	+				-1.6
2,861,819	-				-0.5
2,861,904	+				+0.2
2,861,905	-				+1.4
2,861,906	+				+0.6
2,861,906	+				+0.6
2,861,907	-				-0.8
2,861,907	-				-0.4
2,861,907	-				-0.1
2,861,998	+		LRK53_RS12930	0.28	+0.1
2,861,998	+		LRK53_RS12930	0.28	-1.7
2,861,998	+		LRK53_RS12930	0.28	-1.0
2,862,034	+		LRK53_RS12930	0.39	-0.9
2,862,034	+		LRK53_RS12930	0.39	+0.4
2,862,034	+		LRK53_RS12930	0.39	-1.6
2,862,035	-		LRK53_RS12930	0.40	-0.2
2,862,035	-		LRK53_RS12930	0.40	-1.9
2,862,035	-		LRK53_RS12930	0.40	+1.0
2,862,036	+		LRK53_RS12930	0.40	-1.9
2,862,036	+		LRK53_RS12930	0.40	-0.4
2,862,037	-		LRK53_RS12930	0.40	-1.1
2,862,037	-		LRK53_RS12930	0.40	-0.9
2,862,037	-		LRK53_RS12930	0.40	-0.1
2,862,252	+				+0.4
2,862,252	+				+1.1
2,862,354	+				-1.2
2,862,354	+				-0.1
2,862,354	+				+1.6
2,862,354	+				-0.1
2,862,354	+				-1.4
2,862,354	+				+0.2
2,862,354	+				+0.6
2,862,354	+				-0.3
2,862,354	+				+0.6
2,862,354	+				-0.3
2,862,355	-				-0.6
2,862,355	-				+1.6
2,862,355	-				-0.7
2,862,355	-				-0.4
2,862,355	-				-1.6
2,862,395	+				-0.5
2,862,395	+				-0.3
2,862,395	+				+1.2
2,862,396	-				-0.4
2,862,396	-				+1.1
2,862,442	+				+1.5
2,862,442	+				+1.4
2,862,442	+				+0.2
2,862,442	+				-0.9
2,862,442	+				+2.2
2,862,442	+				-2.5
2,862,442	+				-1.6
2,862,442	+				+1.1
2,862,442	+				+0.2
2,862,442	+				-1.2
2,862,442	+				+1.1
2,862,442	+				+0.4
2,862,442	+				-0.5
2,862,442	+				+2.1
2,862,443	-				-0.2
2,862,443	-				-1.4
2,862,443	-				-0.6
2,862,443	-				+1.1
2,862,443	-				-0.4
2,862,443	-				-0.6
2,862,443	-				-0.9
2,862,443	-				-0.4
2,862,443	-				-1.0
2,862,541	+				+0.2
2,862,541	+				-0.4
2,862,541	+				-0.0
2,862,541	+				+0.2
2,862,541	+				-2.6
2,862,542	-				-1.0
2,862,542	-				+0.3
2,862,542	-				-1.2
2,862,542	-				-0.1
2,862,542	-				-0.2
2,862,835	+		LRK53_RS12935	0.22	-1.0
2,862,835	+		LRK53_RS12935	0.22	+0.1
2,862,835	+		LRK53_RS12935	0.22	+1.5
2,862,835	+		LRK53_RS12935	0.22	-0.8
2,862,835	+		LRK53_RS12935	0.22	+0.9
2,862,835	+		LRK53_RS12935	0.22	-2.0
2,862,835	+		LRK53_RS12935	0.22	+2.4
2,862,835	+		LRK53_RS12935	0.22	-1.3
2,862,835	+		LRK53_RS12935	0.22	+1.0
2,862,835	+		LRK53_RS12935	0.22	-1.5
2,862,835	+		LRK53_RS12935	0.22	+1.0
2,862,835	+		LRK53_RS12935	0.22	+0.1
2,862,835	+		LRK53_RS12935	0.22	+1.1
2,862,835	+		LRK53_RS12935	0.22	-0.2
2,862,835	+		LRK53_RS12935	0.22	-1.5
2,862,836	-		LRK53_RS12935	0.22	+0.4
2,862,836	-		LRK53_RS12935	0.22	+1.5
2,862,836	-		LRK53_RS12935	0.22	+0.1
2,862,836	-		LRK53_RS12935	0.22	+1.3
2,862,836	-		LRK53_RS12935	0.22	+0.1
2,862,836	-		LRK53_RS12935	0.22	+2.4
2,862,836	-		LRK53_RS12935	0.22	+0.5
2,862,836	-		LRK53_RS12935	0.22	-1.6
2,862,836	-		LRK53_RS12935	0.22	-0.7
2,862,836	-		LRK53_RS12935	0.22	-1.6
2,862,836	-		LRK53_RS12935	0.22	+0.1
2,862,836	-		LRK53_RS12935	0.22	+0.2
2,862,836	-		LRK53_RS12935	0.22	+0.9
2,862,836	-		LRK53_RS12935	0.22	-0.2
2,862,836	-		LRK53_RS12935	0.22	+0.8
2,862,836	-		LRK53_RS12935	0.22	+0.9
2,862,910	+		LRK53_RS12935	0.26	-2.2
2,862,911	-		LRK53_RS12935	0.26	-0.1
2,862,959	+		LRK53_RS12935	0.29	+1.4
2,862,959	+		LRK53_RS12935	0.29	+0.8
2,862,960	-		LRK53_RS12935	0.29	-1.6
2,862,960	-		LRK53_RS12935	0.29	-0.2
2,862,960	-		LRK53_RS12935	0.29	+0.1
2,863,022	-		LRK53_RS12935	0.32	-1.1
2,863,038	-		LRK53_RS12935	0.33	-1.0
2,863,053	-		LRK53_RS12935	0.34	-1.7
2,863,053	-		LRK53_RS12935	0.34	-0.6
2,863,065	+		LRK53_RS12935	0.34	-1.7
2,863,065	+		LRK53_RS12935	0.34	+1.9
2,863,065	+		LRK53_RS12935	0.34	+1.9
2,863,065	+		LRK53_RS12935	0.34	-1.1
2,863,065	+		LRK53_RS12935	0.34	-0.1
2,863,065	+		LRK53_RS12935	0.34	-0.2
2,863,065	+		LRK53_RS12935	0.34	+0.5
2,863,065	+		LRK53_RS12935	0.34	-1.5
2,863,066	-		LRK53_RS12935	0.35	+0.9
2,863,066	-		LRK53_RS12935	0.35	+2.3
2,863,066	-		LRK53_RS12935	0.35	-1.6
2,863,066	-		LRK53_RS12935	0.35	+0.8
2,863,066	-		LRK53_RS12935	0.35	+1.1
2,863,066	-		LRK53_RS12935	0.35	+0.1
2,863,069	+		LRK53_RS12935	0.35	+0.2
2,863,069	+		LRK53_RS12935	0.35	-0.9
2,863,069	+		LRK53_RS12935	0.35	+0.9
2,863,069	+		LRK53_RS12935	0.35	-0.7
2,863,069	+		LRK53_RS12935	0.35	-0.1
2,863,070	-		LRK53_RS12935	0.35	-1.6
2,863,070	-		LRK53_RS12935	0.35	+0.0
2,863,070	-		LRK53_RS12935	0.35	-3.2
2,863,070	-		LRK53_RS12935	0.35	+0.5
2,863,071	+		LRK53_RS12935	0.35	+0.4
2,863,072	-		LRK53_RS12935	0.35	-0.1
2,863,150	-		LRK53_RS12935	0.39	+0.7
2,863,245	-		LRK53_RS12935	0.44	+1.4
2,863,245	-		LRK53_RS12935	0.44	-2.1
2,863,245	-		LRK53_RS12935	0.44	+0.7
2,863,245	-		LRK53_RS12935	0.44	-2.0
2,863,246	+		LRK53_RS12935	0.44	+0.4
2,863,246	+		LRK53_RS12935	0.44	-0.2
2,863,246	+		LRK53_RS12935	0.44	-2.1
2,863,247	-		LRK53_RS12935	0.45	-0.8
2,863,247	-		LRK53_RS12935	0.45	-0.2
2,863,247	-		LRK53_RS12935	0.45	+0.5
2,863,247	-		LRK53_RS12935	0.45	-0.6
2,863,247	-		LRK53_RS12935	0.45	+0.1
2,863,298	+		LRK53_RS12935	0.47	-1.6
2,863,299	-		LRK53_RS12935	0.47	-1.2
2,863,299	-		LRK53_RS12935	0.47	-0.6
2,863,299	-		LRK53_RS12935	0.47	+1.5
2,863,299	-		LRK53_RS12935	0.47	-0.3
2,863,304	-		LRK53_RS12935	0.48	+1.0
2,863,304	-		LRK53_RS12935	0.48	-0.3
2,863,322	+		LRK53_RS12935	0.49	+0.4
2,863,340	-		LRK53_RS12935	0.50	-0.8
2,863,414	+		LRK53_RS12935	0.54	-2.9
2,863,414	+		LRK53_RS12935	0.54	+0.2
2,863,414	+		LRK53_RS12935	0.54	+0.5
2,863,414	+		LRK53_RS12935	0.54	-0.7
2,863,414	+		LRK53_RS12935	0.54	+0.4
2,863,415	-		LRK53_RS12935	0.54	-2.1
2,863,415	-		LRK53_RS12935	0.54	-0.3
2,863,415	-		LRK53_RS12935	0.54	-1.5
2,863,429	-		LRK53_RS12935	0.55	+0.2
2,863,429	-		LRK53_RS12935	0.55	-0.5
2,863,483	+		LRK53_RS12935	0.58	+1.1
2,863,484	-		LRK53_RS12935	0.58	-0.5
2,863,497	+		LRK53_RS12935	0.58	-1.6
2,863,497	+		LRK53_RS12935	0.58	+2.2
2,863,502	+		LRK53_RS12935	0.59	+2.2
2,863,502	+		LRK53_RS12935	0.59	-0.7
2,863,502	+		LRK53_RS12935	0.59	-0.7
2,863,502	+		LRK53_RS12935	0.59	-0.2
2,863,503	-		LRK53_RS12935	0.59	-0.6
2,863,570	+		LRK53_RS12935	0.62	-0.5
2,863,602	+		LRK53_RS12935	0.64	-0.5
2,863,626	-		LRK53_RS12935	0.66	-0.2
2,863,651	+		LRK53_RS12935	0.67	-1.1
2,863,651	+		LRK53_RS12935	0.67	+0.5
2,863,651	+		LRK53_RS12935	0.67	-0.0
2,863,652	-		LRK53_RS12935	0.67	+0.4
2,863,652	-		LRK53_RS12935	0.67	-0.6
2,863,673	-		LRK53_RS12935	0.68	-1.6
2,863,687	-		LRK53_RS12935	0.69	+0.0
2,863,732	+		LRK53_RS12935	0.71	-0.4
2,863,733	-		LRK53_RS12935	0.71	+1.6
2,863,751	-		LRK53_RS12935	0.72	+0.4
2,863,751	-		LRK53_RS12935	0.72	-1.9
2,863,769	-		LRK53_RS12935	0.73	-1.2
2,863,769	-		LRK53_RS12935	0.73	+0.4
2,863,778	+		LRK53_RS12935	0.74	-0.9
2,863,779	-		LRK53_RS12935	0.74	+0.2
2,863,823	+		LRK53_RS12935	0.76	-1.0
2,863,824	-		LRK53_RS12935	0.76	-0.9
2,863,837	-		LRK53_RS12935	0.77	+0.0
2,863,917	-		LRK53_RS12935	0.82	-1.0
2,863,955	+		LRK53_RS12935	0.84	+1.5
2,863,955	+		LRK53_RS12935	0.84	-0.8
2,863,981	+		LRK53_RS12935	0.85	+1.0
2,863,993	+		LRK53_RS12935	0.86	+0.2
2,863,993	+		LRK53_RS12935	0.86	+1.5
2,863,993	+		LRK53_RS12935	0.86	-0.3
2,863,994	-		LRK53_RS12935	0.86	-1.3
2,863,994	-		LRK53_RS12935	0.86	-2.8
2,863,994	-		LRK53_RS12935	0.86	-0.3
2,863,994	-		LRK53_RS12935	0.86	-3.2
2,864,017	+		LRK53_RS12935	0.87	+0.1
2,864,017	+		LRK53_RS12935	0.87	-0.5
2,864,018	-		LRK53_RS12935	0.87	+0.1
2,864,018	-		LRK53_RS12935	0.87	-0.5
2,864,018	-		LRK53_RS12935	0.87	+0.2
2,864,018	-		LRK53_RS12935	0.87	-0.4
2,864,026	+		LRK53_RS12935	0.88	+0.0
2,864,027	-		LRK53_RS12935	0.88	+0.1
2,864,027	-		LRK53_RS12935	0.88	-1.5
2,864,027	-		LRK53_RS12935	0.88	-2.3
2,864,027	-		LRK53_RS12935	0.88	-0.5
2,864,098	+				-0.8
2,864,098	+				+0.3
2,864,099	-				-0.2
2,864,099	-				+1.1
2,864,117	+				-1.1
2,864,118	-				+2.4
2,864,153	+				+1.2
2,864,180	+				+0.2
2,864,180	+				-0.2
2,864,181	-				+0.1
2,864,181	-				-0.4
2,864,203	-				-1.0
2,864,235	+				-0.5
2,864,235	+				+0.4
2,864,236	-				+0.1
2,864,255	+				-0.8
2,864,552	+				-0.5
2,864,552	+				-0.5
2,864,552	+				+0.1
2,864,552	+				+0.1
2,864,552	+				-2.0
2,864,552	+				-0.5
2,864,552	+				-2.1
2,864,552	+				-0.6
2,864,552	+				-0.9
2,864,552	+				-0.2
2,864,552	+				+0.8
2,864,552	+				-1.7
2,864,552	+				-0.8
2,864,552	+				+0.8
2,864,552	+				-2.5
2,864,552	+				-2.7
2,864,552	+				-0.5
2,864,552	+				-0.1
2,864,552	+				-0.7
2,864,552	+				+1.1
2,864,552	+				+0.0
2,864,552	+				+1.2
2,864,552	+				+1.4
2,864,552	+				-1.7
2,864,552	+				-0.2
2,864,553	-				-0.7
2,864,553	-				+1.5
2,864,553	-				-1.3
2,864,553	-				-0.7
2,864,553	-				-0.3
2,864,553	-				-0.1
2,864,553	-				-0.9
2,864,553	-				-1.1
2,864,553	-				-2.5
2,864,553	-				-0.6
2,864,553	-				-0.1
2,864,553	-				-0.4
2,864,553	-				-0.9
2,864,553	-				-1.3
2,864,553	-				-1.2
2,864,553	-				+1.4
2,864,553	-				+1.2
2,864,553	-				+2.1
2,864,553	-				-0.2
2,864,616	+				-1.4
2,864,617	-				+1.4
2,864,663	+				+0.6
2,864,663	+				-0.4
2,864,663	+				+0.3
2,864,664	-				+1.9
2,864,664	-				+0.6
2,864,704	+		LRK53_RS12945	0.24	-0.8
2,864,704	+		LRK53_RS12945	0.24	-0.3
2,864,704	+		LRK53_RS12945	0.24	-0.7
2,864,704	+		LRK53_RS12945	0.24	+0.4
2,864,704	+		LRK53_RS12945	0.24	-0.7
2,864,704	+		LRK53_RS12945	0.24	-0.3
2,864,704	+		LRK53_RS12945	0.24	+2.3
2,864,705	-		LRK53_RS12945	0.24	+2.4
2,864,705	-		LRK53_RS12945	0.24	-0.6
2,864,705	-		LRK53_RS12945	0.24	-0.2
2,864,705	-		LRK53_RS12945	0.24	+0.8
2,864,719	+		LRK53_RS12945	0.29	-0.3
2,864,719	+		LRK53_RS12945	0.29	-1.4
2,864,719	+		LRK53_RS12945	0.29	+1.7
2,864,719	+		LRK53_RS12945	0.29	-0.2
2,864,719	+		LRK53_RS12945	0.29	-0.4
2,864,719	+		LRK53_RS12945	0.29	-0.1
2,864,719	+		LRK53_RS12945	0.29	-0.1
2,864,719	+		LRK53_RS12945	0.29	-2.5
2,864,719	+		LRK53_RS12945	0.29	-0.6
2,864,720	-		LRK53_RS12945	0.30	-0.4
2,864,720	-		LRK53_RS12945	0.30	-2.3
2,864,720	-		LRK53_RS12945	0.30	+1.1
2,864,720	-		LRK53_RS12945	0.30	-1.2
2,864,720	-		LRK53_RS12945	0.30	-0.4
2,864,720	-		LRK53_RS12945	0.30	-0.9
2,864,731	+		LRK53_RS12945	0.34	-0.1
2,864,731	+		LRK53_RS12945	0.34	-1.0
2,864,731	+		LRK53_RS12945	0.34	-1.7
2,864,731	+		LRK53_RS12945	0.34	+0.4
2,864,731	+		LRK53_RS12945	0.34	-1.0
2,864,731	+		LRK53_RS12945	0.34	+0.1
2,864,731	+		LRK53_RS12945	0.34	-0.7
2,864,731	+		LRK53_RS12945	0.34	+0.5
2,864,731	+		LRK53_RS12945	0.34	-1.0
2,864,731	+		LRK53_RS12945	0.34	-0.6
2,864,731	+		LRK53_RS12945	0.34	-0.6
2,864,731	+		LRK53_RS12945	0.34	-0.1
2,864,731	+		LRK53_RS12945	0.34	-1.4
2,864,731	+		LRK53_RS12945	0.34	-0.6
2,864,731	+		LRK53_RS12945	0.34	-0.3
2,864,731	+		LRK53_RS12945	0.34	-0.4
2,864,731	+		LRK53_RS12945	0.34	-0.5
2,864,731	+		LRK53_RS12945	0.34	-0.3
2,864,731	+		LRK53_RS12945	0.34	+0.4
2,864,731	+		LRK53_RS12945	0.34	+0.6
2,864,731	+		LRK53_RS12945	0.34	-2.1
2,864,731	+		LRK53_RS12945	0.34	+0.4
2,864,731	+		LRK53_RS12945	0.34	+0.1
2,864,731	+		LRK53_RS12945	0.34	+0.2
2,864,732	-		LRK53_RS12945	0.34	-0.3
2,864,732	-		LRK53_RS12945	0.34	-0.2
2,864,732	-		LRK53_RS12945	0.34	-0.8
2,864,732	-		LRK53_RS12945	0.34	-2.1
2,864,732	-		LRK53_RS12945	0.34	+0.4
2,864,732	-		LRK53_RS12945	0.34	+0.8
2,864,732	-		LRK53_RS12945	0.34	-0.9
2,864,732	-		LRK53_RS12945	0.34	-0.8
2,864,732	-		LRK53_RS12945	0.34	-1.1
2,864,732	-		LRK53_RS12945	0.34	-0.2
2,864,732	-		LRK53_RS12945	0.34	+0.4
2,864,732	-		LRK53_RS12945	0.34	+0.0
2,864,732	-		LRK53_RS12945	0.34	-1.4
2,864,732	-		LRK53_RS12945	0.34	+0.0
2,864,815	-		LRK53_RS12945	0.65	-0.2
2,864,815	-		LRK53_RS12945	0.65	+3.4
2,864,852	+		LRK53_RS12945	0.79	-4.1
2,864,853	-		LRK53_RS12945	0.79	+2.3
2,864,853	-		LRK53_RS12945	0.79	+1.6
2,864,853	-		LRK53_RS12945	0.79	-1.1
2,864,853	-		LRK53_RS12945	0.79	+0.9
2,864,898	+				-0.9
2,864,912	+				-0.1
2,864,912	+				-0.3
2,864,912	+				+0.1
2,864,912	+				-0.5
2,864,912	+				-0.3
2,864,913	-				+0.2
2,864,913	-				-1.3
2,864,913	-				+1.1
2,864,913	-				-0.1
2,864,913	-				-0.7
2,864,923	+				-0.2
2,864,923	+				-1.2
2,865,016	-				-1.1
2,865,016	-				+0.5
2,865,016	-				+0.4
2,865,016	-				+1.5
2,865,042	+				-2.1
2,865,042	+				-0.7
2,865,042	+				-1.1
2,865,042	+				+0.4
2,865,042	+				-1.1
2,865,042	+				-1.8
2,865,042	+				-1.4
2,865,042	+				-1.1
2,865,043	-				+0.1
2,865,043	-				+0.9
2,865,043	-				+0.6
2,865,043	-				+0.6
2,865,043	-				-2.3
2,865,043	-				+0.4
2,865,043	-				-2.7
2,865,043	-				-0.2
2,865,169	+		LRK53_RS12950	0.15	-0.3
2,865,169	+		LRK53_RS12950	0.15	-1.1
2,865,169	+		LRK53_RS12950	0.15	-1.1
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2,865,169	+		LRK53_RS12950	0.15	-1.5
2,865,169	+		LRK53_RS12950	0.15	-0.1
2,865,170	-		LRK53_RS12950	0.15	-0.6
2,865,245	+		LRK53_RS12950	0.24	-1.0
2,865,245	+		LRK53_RS12950	0.24	+1.9
2,865,245	+		LRK53_RS12950	0.24	-0.5
2,865,245	+		LRK53_RS12950	0.24	+0.7
2,865,245	+		LRK53_RS12950	0.24	+0.9
2,865,245	+		LRK53_RS12950	0.24	-1.8
2,865,245	+		LRK53_RS12950	0.24	-1.5
2,865,246	-		LRK53_RS12950	0.24	-0.6
2,865,246	-		LRK53_RS12950	0.24	-0.5