Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08065

Experiment: biofilm; Day1; NLDM;

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM;
1,810,218	+		LRK53_RS08060	0.45	-1.2
1,810,218	+		LRK53_RS08060	0.45	+0.7
1,810,359	+		LRK53_RS08060	0.56	-0.6
1,810,475	+		LRK53_RS08060	0.66	-1.7
1,810,475	+		LRK53_RS08060	0.66	-1.5
1,810,476	-		LRK53_RS08060	0.66	-0.9
1,810,476	-		LRK53_RS08060	0.66	-1.3
1,810,476	-		LRK53_RS08060	0.66	+0.2
1,810,584	+		LRK53_RS08060	0.75	+0.4
1,810,585	-		LRK53_RS08060	0.75	-1.4
1,810,585	-		LRK53_RS08060	0.75	-1.9
1,810,585	-		LRK53_RS08060	0.75	-1.2
1,810,629	+		LRK53_RS08060	0.78	-0.5
1,810,630	-		LRK53_RS08060	0.78	-0.3
1,810,630	-		LRK53_RS08060	0.78	+1.0
1,810,686	+		LRK53_RS08060	0.83	-1.1
1,810,759	-		LRK53_RS08060	0.89	-0.7
1,810,765	+		LRK53_RS08060	0.89	-1.5
1,810,765	+		LRK53_RS08060	0.89	+1.4
1,810,765	+		LRK53_RS08060	0.89	-1.5
1,810,765	+		LRK53_RS08060	0.89	-0.6
1,810,765	+		LRK53_RS08060	0.89	-1.7
1,810,765	+		LRK53_RS08060	0.89	-1.2
1,810,765	+		LRK53_RS08060	0.89	-1.8
1,810,766	-		LRK53_RS08060	0.89	-1.4
1,810,766	-		LRK53_RS08060	0.89	+1.1
1,810,766	-		LRK53_RS08060	0.89	-0.1
1,810,766	-		LRK53_RS08060	0.89	-1.9
1,810,785	+				-2.5
1,810,785	+				-1.0
1,810,785	+				+0.1
1,810,785	+				+0.2
1,810,785	+				-0.4
1,810,785	+				-0.4
1,810,785	+				+0.1
1,810,786	-				-1.0
1,810,786	-				+0.1
1,810,786	-				-1.9
1,810,786	-				-1.5
1,810,786	-				-1.1
1,810,795	+				-1.0
1,810,796	-				+0.1
1,810,989	+				-0.3
1,811,206	-		LRK53_RS08065	0.27	+0.3
1,811,382	+		LRK53_RS08065	0.43	-1.0
1,811,382	+		LRK53_RS08065	0.43	-2.7
1,811,382	+		LRK53_RS08065	0.43	-0.6
1,811,382	+		LRK53_RS08065	0.43	-0.6
1,811,383	-		LRK53_RS08065	0.43	-0.1
1,811,383	-		LRK53_RS08065	0.43	-0.3
1,811,383	-		LRK53_RS08065	0.43	-1.0
1,811,754	+		LRK53_RS08065	0.77	-0.2
1,811,754	+		LRK53_RS08065	0.77	-1.2
1,811,754	+		LRK53_RS08065	0.77	-2.3
1,811,754	+		LRK53_RS08065	0.77	-0.3
1,811,754	+		LRK53_RS08065	0.77	-2.6
1,811,754	+		LRK53_RS08065	0.77	-1.2
1,811,754	+		LRK53_RS08065	0.77	-1.5
1,811,755	-		LRK53_RS08065	0.78	-0.7
1,811,755	-		LRK53_RS08065	0.78	-1.8
1,811,755	-		LRK53_RS08065	0.78	-1.2
1,811,755	-		LRK53_RS08065	0.78	-0.7
1,811,755	-		LRK53_RS08065	0.78	+0.7
1,811,755	-		LRK53_RS08065	0.78	-0.9
1,811,755	-		LRK53_RS08065	0.78	-0.4
1,811,945	+				-3.1
1,811,945	+				-2.2
1,811,945	+				-0.9
1,812,092	+		LRK53_RS08070	0.20	+1.5
1,812,152	+		LRK53_RS08070	0.33	-0.1
1,812,153	-		LRK53_RS08070	0.33	+1.4
1,812,153	-		LRK53_RS08070	0.33	-0.6
1,812,153	-		LRK53_RS08070	0.33	-1.5
1,812,254	+		LRK53_RS08070	0.56	+0.6
1,812,254	+		LRK53_RS08070	0.56	-1.1
1,812,255	-		LRK53_RS08070	0.56	-0.4
1,812,255	-		LRK53_RS08070	0.56	-0.7
1,812,255	-		LRK53_RS08070	0.56	+1.4
1,812,386	+		LRK53_RS08070	0.85	-1.5
1,812,386	+		LRK53_RS08070	0.85	-0.1
1,812,386	+		LRK53_RS08070	0.85	-0.6
1,812,386	+		LRK53_RS08070	0.85	-1.0
1,812,386	+		LRK53_RS08070	0.85	-1.8
1,812,387	-		LRK53_RS08070	0.85	-1.5
1,812,387	-		LRK53_RS08070	0.85	-1.6
1,812,387	-		LRK53_RS08070	0.85	-1.0
1,812,428	+				-2.3
1,812,428	+				-1.1
1,812,429	-				-1.4
1,812,523	+				-0.9
1,812,523	+				-0.4
1,812,523	+				-1.5
1,812,523	+				-0.3
1,812,523	+				-0.7
1,812,523	+				-1.7
1,812,523	+				-1.4
1,812,523	+				-2.1
1,812,523	+				+0.8
1,812,523	+				+0.9
1,812,523	+				-0.1
1,812,523	+				-2.5
1,812,523	+				+0.3
1,812,523	+				-1.9
1,812,523	+				-1.4
1,812,524	-				-1.1
1,812,524	-				-0.1
1,812,524	-				-1.4
1,812,524	-				-0.8
1,812,524	-				-0.7
1,812,524	-				-0.6
1,812,524	-				-0.0
1,812,524	-				-2.3
1,812,524	-				-1.0
1,812,525	+				-1.8
1,812,525	+				-0.9
1,812,525	+				+0.4
1,812,525	+				-0.7
1,812,525	+				-0.7
1,812,525	+				+0.7
1,812,525	+				-0.5
1,812,525	+				+1.2
1,812,525	+				-1.3
1,812,525	+				-1.2
1,812,525	+				-0.5
1,812,525	+				-0.4
1,812,526	-				-2.0
1,812,526	-				-0.1
1,812,526	-				-0.3
1,812,526	-				-0.1
1,812,526	-				-0.1
1,812,526	-				-0.8
1,812,526	-				+0.2
1,812,526	-				-0.5
1,812,526	-				-0.4
1,812,526	-				-1.1
1,812,526	-				+1.6
1,812,634	+		LRK53_RS08075	0.24	-0.4
1,812,634	+		LRK53_RS08075	0.24	-0.5
1,812,634	+		LRK53_RS08075	0.24	-0.1
1,812,634	+		LRK53_RS08075	0.24	-2.0
1,812,634	+		LRK53_RS08075	0.24	-1.3
1,812,634	+		LRK53_RS08075	0.24	-1.1
1,812,634	+		LRK53_RS08075	0.24	-0.6
1,812,634	+		LRK53_RS08075	0.24	+1.3
1,812,634	+		LRK53_RS08075	0.24	-1.3
1,812,634	+		LRK53_RS08075	0.24	-0.3
1,812,634	+		LRK53_RS08075	0.24	-0.6
1,812,635	-		LRK53_RS08075	0.24	-1.4
1,812,635	-		LRK53_RS08075	0.24	-0.8
1,812,682	-		LRK53_RS08075	0.36	+0.0
1,812,682	-		LRK53_RS08075	0.36	+1.1
1,812,682	-		LRK53_RS08075	0.36	-0.9
1,812,682	-		LRK53_RS08075	0.36	+0.6
1,812,682	-		LRK53_RS08075	0.36	+0.1
1,812,810	-		LRK53_RS08075	0.67	-2.4
1,812,810	-		LRK53_RS08075	0.67	-1.5
1,812,958	+				-0.7
1,812,958	+				-1.3
1,812,959	-				+1.4
1,812,959	-				+0.6