Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05595

Experiment: biofilm; Day1; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05585 and LRK53_RS05590 are separated by 5 nucleotidesLRK53_RS05590 and LRK53_RS05595 are separated by 99 nucleotidesLRK53_RS05595 and LRK53_RS05600 are separated by 33 nucleotides LRK53_RS05585: LRK53_RS05585 - hypothetical protein, at 1,302,744 to 1,303,232 _RS05585 LRK53_RS05590: LRK53_RS05590 - ribosomal protein S18-alanine N-acetyltransferase, at 1,303,238 to 1,303,708 _RS05590 LRK53_RS05595: LRK53_RS05595 - class I SAM-dependent methyltransferase, at 1,303,808 to 1,304,494 _RS05595 LRK53_RS05600: LRK53_RS05600 - valine--tRNA ligase, at 1,304,528 to 1,307,491 _RS05600 Position (kb) 1303 1304 1305Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1303.308 kb on + strand, within LRK53_RS05590at 1303.308 kb on + strand, within LRK53_RS05590at 1303.308 kb on + strand, within LRK53_RS05590at 1303.308 kb on + strand, within LRK53_RS05590at 1303.309 kb on - strand, within LRK53_RS05590at 1303.325 kb on + strand, within LRK53_RS05590at 1303.325 kb on + strand, within LRK53_RS05590at 1303.325 kb on + strand, within LRK53_RS05590at 1303.326 kb on - strand, within LRK53_RS05590at 1303.326 kb on - strand, within LRK53_RS05590at 1303.326 kb on - strand, within LRK53_RS05590at 1303.326 kb on - strand, within LRK53_RS05590at 1303.419 kb on - strand, within LRK53_RS05590at 1303.601 kb on + strand, within LRK53_RS05590at 1303.601 kb on + strand, within LRK53_RS05590at 1303.601 kb on + strand, within LRK53_RS05590at 1303.601 kb on + strand, within LRK53_RS05590at 1303.601 kb on + strand, within LRK53_RS05590at 1303.601 kb on + strand, within LRK53_RS05590at 1303.601 kb on + strand, within LRK53_RS05590at 1303.601 kb on + strand, within LRK53_RS05590at 1303.601 kb on + strand, within LRK53_RS05590at 1303.602 kb on - strand, within LRK53_RS05590at 1303.643 kb on + strand, within LRK53_RS05590at 1303.643 kb on + strand, within LRK53_RS05590at 1303.643 kb on + strand, within LRK53_RS05590at 1303.643 kb on + strand, within LRK53_RS05590at 1303.646 kb on + strand, within LRK53_RS05590at 1303.646 kb on + strand, within LRK53_RS05590at 1303.646 kb on + strand, within LRK53_RS05590at 1303.646 kb on + strand, within LRK53_RS05590at 1303.646 kb on + strand, within LRK53_RS05590at 1303.646 kb on + strand, within LRK53_RS05590at 1303.647 kb on - strand, within LRK53_RS05590at 1303.647 kb on - strand, within LRK53_RS05590at 1303.647 kb on - strand, within LRK53_RS05590at 1303.771 kb on + strandat 1303.771 kb on + strandat 1303.771 kb on + strandat 1303.771 kb on + strandat 1303.772 kb on - strandat 1303.989 kb on + strand, within LRK53_RS05595at 1303.989 kb on + strand, within LRK53_RS05595at 1303.989 kb on + strand, within LRK53_RS05595at 1303.989 kb on + strand, within LRK53_RS05595at 1303.989 kb on + strand, within LRK53_RS05595at 1303.989 kb on + strand, within LRK53_RS05595at 1303.990 kb on - strand, within LRK53_RS05595at 1303.990 kb on - strand, within LRK53_RS05595at 1303.990 kb on - strand, within LRK53_RS05595at 1303.990 kb on - strand, within LRK53_RS05595at 1303.990 kb on - strand, within LRK53_RS05595at 1304.015 kb on + strand, within LRK53_RS05595at 1304.015 kb on + strand, within LRK53_RS05595at 1304.015 kb on + strand, within LRK53_RS05595at 1304.015 kb on + strand, within LRK53_RS05595at 1304.016 kb on - strand, within LRK53_RS05595at 1304.024 kb on + strand, within LRK53_RS05595at 1304.024 kb on + strand, within LRK53_RS05595at 1304.025 kb on - strand, within LRK53_RS05595at 1304.025 kb on - strand, within LRK53_RS05595at 1304.025 kb on - strand, within LRK53_RS05595at 1304.025 kb on - strand, within LRK53_RS05595at 1304.025 kb on - strand, within LRK53_RS05595at 1304.025 kb on - strand, within LRK53_RS05595at 1304.123 kb on + strand, within LRK53_RS05595at 1304.123 kb on + strand, within LRK53_RS05595at 1304.123 kb on + strand, within LRK53_RS05595at 1304.124 kb on - strand, within LRK53_RS05595at 1304.124 kb on - strand, within LRK53_RS05595at 1304.124 kb on - strand, within LRK53_RS05595at 1304.124 kb on - strand, within LRK53_RS05595at 1304.124 kb on - strand, within LRK53_RS05595at 1304.124 kb on - strand, within LRK53_RS05595at 1304.124 kb on - strand, within LRK53_RS05595at 1304.135 kb on + strand, within LRK53_RS05595at 1304.135 kb on + strand, within LRK53_RS05595at 1304.135 kb on + strand, within LRK53_RS05595at 1304.135 kb on + strand, within LRK53_RS05595at 1304.135 kb on + strand, within LRK53_RS05595at 1304.135 kb on + strand, within LRK53_RS05595at 1304.136 kb on - strand, within LRK53_RS05595at 1304.136 kb on - strand, within LRK53_RS05595at 1304.136 kb on - strand, within LRK53_RS05595at 1304.136 kb on - strand, within LRK53_RS05595at 1304.136 kb on - strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.231 kb on + strand, within LRK53_RS05595at 1304.232 kb on - strand, within LRK53_RS05595at 1304.232 kb on - strand, within LRK53_RS05595at 1304.232 kb on - strand, within LRK53_RS05595at 1304.232 kb on - strand, within LRK53_RS05595at 1304.232 kb on - strand, within LRK53_RS05595at 1304.408 kb on + strand, within LRK53_RS05595at 1304.408 kb on + strand, within LRK53_RS05595at 1304.409 kb on - strand, within LRK53_RS05595at 1304.409 kb on - strand, within LRK53_RS05595at 1304.409 kb on - strand, within LRK53_RS05595at 1304.411 kb on + strand, within LRK53_RS05595at 1304.411 kb on + strand, within LRK53_RS05595at 1304.411 kb on + strand, within LRK53_RS05595at 1304.411 kb on + strand, within LRK53_RS05595at 1304.411 kb on + strand, within LRK53_RS05595at 1304.411 kb on + strand, within LRK53_RS05595at 1304.411 kb on + strand, within LRK53_RS05595at 1304.411 kb on + strand, within LRK53_RS05595at 1304.412 kb on - strand, within LRK53_RS05595at 1304.412 kb on - strand, within LRK53_RS05595at 1304.412 kb on - strand, within LRK53_RS05595at 1304.412 kb on - strand, within LRK53_RS05595at 1304.412 kb on - strand, within LRK53_RS05595at 1304.412 kb on - strand, within LRK53_RS05595

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM;
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1,303,308 + LRK53_RS05590 0.15 +0.0
1,303,308 + LRK53_RS05590 0.15 -1.4
1,303,308 + LRK53_RS05590 0.15 -2.7
1,303,308 + LRK53_RS05590 0.15 -2.1
1,303,309 - LRK53_RS05590 0.15 -0.0
1,303,325 + LRK53_RS05590 0.18 +1.2
1,303,325 + LRK53_RS05590 0.18 -1.1
1,303,325 + LRK53_RS05590 0.18 -3.9
1,303,326 - LRK53_RS05590 0.19 +0.1
1,303,326 - LRK53_RS05590 0.19 -0.6
1,303,326 - LRK53_RS05590 0.19 +2.1
1,303,326 - LRK53_RS05590 0.19 -1.2
1,303,419 - LRK53_RS05590 0.38 -0.9
1,303,601 + LRK53_RS05590 0.77 -1.0
1,303,601 + LRK53_RS05590 0.77 -1.0
1,303,601 + LRK53_RS05590 0.77 -1.0
1,303,601 + LRK53_RS05590 0.77 +0.1
1,303,601 + LRK53_RS05590 0.77 -1.3
1,303,601 + LRK53_RS05590 0.77 +2.9
1,303,601 + LRK53_RS05590 0.77 -0.9
1,303,601 + LRK53_RS05590 0.77 -1.9
1,303,601 + LRK53_RS05590 0.77 -1.4
1,303,602 - LRK53_RS05590 0.77 -1.3
1,303,643 + LRK53_RS05590 0.86 -1.6
1,303,643 + LRK53_RS05590 0.86 -0.7
1,303,643 + LRK53_RS05590 0.86 -0.6
1,303,643 + LRK53_RS05590 0.86 -1.4
1,303,646 + LRK53_RS05590 0.87 -1.5
1,303,646 + LRK53_RS05590 0.87 -1.3
1,303,646 + LRK53_RS05590 0.87 -1.2
1,303,646 + LRK53_RS05590 0.87 -1.0
1,303,646 + LRK53_RS05590 0.87 -0.8
1,303,646 + LRK53_RS05590 0.87 -1.0
1,303,647 - LRK53_RS05590 0.87 +0.3
1,303,647 - LRK53_RS05590 0.87 -1.5
1,303,647 - LRK53_RS05590 0.87 -1.9
1,303,771 + -0.7
1,303,771 + -0.9
1,303,771 + -1.3
1,303,771 + -1.4
1,303,772 - -0.7
1,303,989 + LRK53_RS05595 0.26 -1.9
1,303,989 + LRK53_RS05595 0.26 +1.0
1,303,989 + LRK53_RS05595 0.26 -0.7
1,303,989 + LRK53_RS05595 0.26 -1.7
1,303,989 + LRK53_RS05595 0.26 -1.0
1,303,989 + LRK53_RS05595 0.26 -1.4
1,303,990 - LRK53_RS05595 0.26 -1.5
1,303,990 - LRK53_RS05595 0.26 -1.1
1,303,990 - LRK53_RS05595 0.26 -0.9
1,303,990 - LRK53_RS05595 0.26 -2.5
1,303,990 - LRK53_RS05595 0.26 -0.3
1,304,015 + LRK53_RS05595 0.30 -0.0
1,304,015 + LRK53_RS05595 0.30 -0.8
1,304,015 + LRK53_RS05595 0.30 -0.4
1,304,015 + LRK53_RS05595 0.30 -0.7
1,304,016 - LRK53_RS05595 0.30 +0.0
1,304,024 + LRK53_RS05595 0.31 -0.9
1,304,024 + LRK53_RS05595 0.31 -0.7
1,304,025 - LRK53_RS05595 0.32 -0.6
1,304,025 - LRK53_RS05595 0.32 -0.5
1,304,025 - LRK53_RS05595 0.32 -0.3
1,304,025 - LRK53_RS05595 0.32 +0.6
1,304,025 - LRK53_RS05595 0.32 +1.1
1,304,025 - LRK53_RS05595 0.32 +0.3
1,304,123 + LRK53_RS05595 0.46 +0.1
1,304,123 + LRK53_RS05595 0.46 -0.3
1,304,123 + LRK53_RS05595 0.46 -1.7
1,304,124 - LRK53_RS05595 0.46 -0.7
1,304,124 - LRK53_RS05595 0.46 +0.2
1,304,124 - LRK53_RS05595 0.46 -2.9
1,304,124 - LRK53_RS05595 0.46 -0.7
1,304,124 - LRK53_RS05595 0.46 -1.6
1,304,124 - LRK53_RS05595 0.46 -3.0
1,304,124 - LRK53_RS05595 0.46 -0.1
1,304,135 + LRK53_RS05595 0.48 -0.1
1,304,135 + LRK53_RS05595 0.48 -1.3
1,304,135 + LRK53_RS05595 0.48 +1.7
1,304,135 + LRK53_RS05595 0.48 -1.6
1,304,135 + LRK53_RS05595 0.48 -1.0
1,304,135 + LRK53_RS05595 0.48 -1.2
1,304,136 - LRK53_RS05595 0.48 -1.2
1,304,136 - LRK53_RS05595 0.48 +1.5
1,304,136 - LRK53_RS05595 0.48 -0.7
1,304,136 - LRK53_RS05595 0.48 -1.4
1,304,136 - LRK53_RS05595 0.48 -1.9
1,304,231 + LRK53_RS05595 0.62 -0.6
1,304,231 + LRK53_RS05595 0.62 -1.8
1,304,231 + LRK53_RS05595 0.62 -0.6
1,304,231 + LRK53_RS05595 0.62 -2.0
1,304,231 + LRK53_RS05595 0.62 +1.0
1,304,231 + LRK53_RS05595 0.62 +0.0
1,304,231 + LRK53_RS05595 0.62 -0.9
1,304,231 + LRK53_RS05595 0.62 -1.2
1,304,231 + LRK53_RS05595 0.62 +0.2
1,304,231 + LRK53_RS05595 0.62 +0.6
1,304,231 + LRK53_RS05595 0.62 -1.6
1,304,231 + LRK53_RS05595 0.62 -1.8
1,304,231 + LRK53_RS05595 0.62 -1.2
1,304,231 + LRK53_RS05595 0.62 -1.6
1,304,232 - LRK53_RS05595 0.62 -1.2
1,304,232 - LRK53_RS05595 0.62 -1.5
1,304,232 - LRK53_RS05595 0.62 -0.3
1,304,232 - LRK53_RS05595 0.62 +1.1
1,304,232 - LRK53_RS05595 0.62 -2.3
1,304,408 + LRK53_RS05595 0.87 -1.5
1,304,408 + LRK53_RS05595 0.87 +0.4
1,304,409 - LRK53_RS05595 0.87 -1.4
1,304,409 - LRK53_RS05595 0.87 -2.3
1,304,409 - LRK53_RS05595 0.87 -2.0
1,304,411 + LRK53_RS05595 0.88 -0.7
1,304,411 + LRK53_RS05595 0.88 -0.1
1,304,411 + LRK53_RS05595 0.88 -1.2
1,304,411 + LRK53_RS05595 0.88 -1.4
1,304,411 + LRK53_RS05595 0.88 -2.8
1,304,411 + LRK53_RS05595 0.88 -1.4
1,304,411 + LRK53_RS05595 0.88 -0.4
1,304,411 + LRK53_RS05595 0.88 -0.7
1,304,412 - LRK53_RS05595 0.88 +0.5
1,304,412 - LRK53_RS05595 0.88 -2.9
1,304,412 - LRK53_RS05595 0.88 -1.2
1,304,412 - LRK53_RS05595 0.88 -0.3
1,304,412 - LRK53_RS05595 0.88 -0.8
1,304,412 - LRK53_RS05595 0.88 +1.5

Or see this region's nucleotide sequence