Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03250

Experiment: biofilm; Day1; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03245 and LRK53_RS03250 are separated by 83 nucleotidesLRK53_RS03250 and LRK53_RS03255 are separated by 206 nucleotides LRK53_RS03245: LRK53_RS03245 - glycerophosphodiester phosphodiesterase, at 762,208 to 763,257 _RS03245 LRK53_RS03250: LRK53_RS03250 - ectonucleotide pyrophosphatase/phosphodiesterase, at 763,341 to 764,678 _RS03250 LRK53_RS03255: LRK53_RS03255 - TonB-dependent receptor, at 764,885 to 767,176 _RS03255 Position (kb) 763 764 765Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 762.688 kb on + strand, within LRK53_RS03245at 762.688 kb on + strand, within LRK53_RS03245at 762.688 kb on + strand, within LRK53_RS03245at 762.688 kb on + strand, within LRK53_RS03245at 762.689 kb on - strand, within LRK53_RS03245at 762.751 kb on + strand, within LRK53_RS03245at 762.751 kb on + strand, within LRK53_RS03245at 762.752 kb on - strand, within LRK53_RS03245at 762.752 kb on - strand, within LRK53_RS03245at 762.805 kb on + strand, within LRK53_RS03245at 762.805 kb on + strand, within LRK53_RS03245at 762.806 kb on - strand, within LRK53_RS03245at 762.806 kb on - strand, within LRK53_RS03245at 762.806 kb on - strand, within LRK53_RS03245at 762.806 kb on - strand, within LRK53_RS03245at 762.806 kb on - strand, within LRK53_RS03245at 762.883 kb on + strand, within LRK53_RS03245at 762.916 kb on + strand, within LRK53_RS03245at 762.916 kb on + strand, within LRK53_RS03245at 762.962 kb on - strand, within LRK53_RS03245at 762.962 kb on - strand, within LRK53_RS03245at 762.962 kb on - strand, within LRK53_RS03245at 762.962 kb on - strand, within LRK53_RS03245at 763.081 kb on + strand, within LRK53_RS03245at 763.184 kb on - strandat 763.184 kb on - strandat 763.560 kb on + strand, within LRK53_RS03250at 763.560 kb on + strand, within LRK53_RS03250at 763.560 kb on + strand, within LRK53_RS03250at 763.560 kb on + strand, within LRK53_RS03250at 763.561 kb on - strand, within LRK53_RS03250at 763.662 kb on + strand, within LRK53_RS03250at 763.662 kb on + strand, within LRK53_RS03250at 763.662 kb on + strand, within LRK53_RS03250at 763.662 kb on + strand, within LRK53_RS03250at 763.663 kb on - strand, within LRK53_RS03250at 763.668 kb on + strand, within LRK53_RS03250at 763.668 kb on + strand, within LRK53_RS03250at 763.669 kb on - strand, within LRK53_RS03250at 763.669 kb on - strand, within LRK53_RS03250at 763.669 kb on - strand, within LRK53_RS03250at 763.881 kb on + strand, within LRK53_RS03250at 763.980 kb on + strand, within LRK53_RS03250at 763.980 kb on + strand, within LRK53_RS03250at 763.980 kb on + strand, within LRK53_RS03250at 763.980 kb on + strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 763.981 kb on - strand, within LRK53_RS03250at 764.346 kb on + strand, within LRK53_RS03250at 764.346 kb on + strand, within LRK53_RS03250at 764.346 kb on + strand, within LRK53_RS03250at 764.346 kb on + strand, within LRK53_RS03250at 764.347 kb on - strand, within LRK53_RS03250at 764.347 kb on - strand, within LRK53_RS03250at 764.436 kb on + strand, within LRK53_RS03250at 764.436 kb on + strand, within LRK53_RS03250at 764.436 kb on + strand, within LRK53_RS03250at 764.484 kb on + strand, within LRK53_RS03250at 764.484 kb on + strand, within LRK53_RS03250at 764.503 kb on - strand, within LRK53_RS03250at 764.756 kb on + strandat 764.756 kb on + strandat 764.757 kb on - strandat 764.876 kb on + strandat 764.877 kb on - strandat 764.893 kb on - strandat 765.206 kb on + strand, within LRK53_RS03255at 765.206 kb on + strand, within LRK53_RS03255at 765.206 kb on + strand, within LRK53_RS03255at 765.207 kb on - strand, within LRK53_RS03255at 765.207 kb on - strand, within LRK53_RS03255at 765.297 kb on - strand, within LRK53_RS03255at 765.420 kb on + strand, within LRK53_RS03255at 765.420 kb on + strand, within LRK53_RS03255at 765.420 kb on + strand, within LRK53_RS03255at 765.420 kb on + strand, within LRK53_RS03255at 765.421 kb on - strand, within LRK53_RS03255at 765.421 kb on - strand, within LRK53_RS03255at 765.421 kb on - strand, within LRK53_RS03255at 765.428 kb on + strand, within LRK53_RS03255at 765.428 kb on + strand, within LRK53_RS03255at 765.429 kb on - strand, within LRK53_RS03255at 765.452 kb on + strand, within LRK53_RS03255at 765.452 kb on + strand, within LRK53_RS03255at 765.453 kb on - strand, within LRK53_RS03255at 765.503 kb on + strand, within LRK53_RS03255at 765.503 kb on + strand, within LRK53_RS03255at 765.504 kb on - strand, within LRK53_RS03255at 765.504 kb on - strand, within LRK53_RS03255at 765.545 kb on + strand, within LRK53_RS03255at 765.545 kb on + strand, within LRK53_RS03255at 765.545 kb on + strand, within LRK53_RS03255at 765.546 kb on - strand, within LRK53_RS03255at 765.546 kb on - strand, within LRK53_RS03255at 765.546 kb on - strand, within LRK53_RS03255at 765.546 kb on - strand, within LRK53_RS03255at 765.546 kb on - strand, within LRK53_RS03255at 765.546 kb on - strand, within LRK53_RS03255at 765.546 kb on - strand, within LRK53_RS03255at 765.629 kb on + strand, within LRK53_RS03255at 765.629 kb on + strand, within LRK53_RS03255at 765.630 kb on - strand, within LRK53_RS03255at 765.630 kb on - strand, within LRK53_RS03255at 765.630 kb on - strand, within LRK53_RS03255

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM;
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762,688 + LRK53_RS03245 0.46 -1.2
762,688 + LRK53_RS03245 0.46 -0.7
762,688 + LRK53_RS03245 0.46 -1.8
762,688 + LRK53_RS03245 0.46 +0.6
762,689 - LRK53_RS03245 0.46 +1.1
762,751 + LRK53_RS03245 0.52 +1.5
762,751 + LRK53_RS03245 0.52 -1.0
762,752 - LRK53_RS03245 0.52 -1.2
762,752 - LRK53_RS03245 0.52 +0.3
762,805 + LRK53_RS03245 0.57 +0.6
762,805 + LRK53_RS03245 0.57 +0.8
762,806 - LRK53_RS03245 0.57 -0.6
762,806 - LRK53_RS03245 0.57 -2.1
762,806 - LRK53_RS03245 0.57 +0.7
762,806 - LRK53_RS03245 0.57 -0.1
762,806 - LRK53_RS03245 0.57 -0.1
762,883 + LRK53_RS03245 0.64 +0.5
762,916 + LRK53_RS03245 0.67 +2.5
762,916 + LRK53_RS03245 0.67 -2.2
762,962 - LRK53_RS03245 0.72 +1.0
762,962 - LRK53_RS03245 0.72 -0.1
762,962 - LRK53_RS03245 0.72 +1.0
762,962 - LRK53_RS03245 0.72 -0.9
763,081 + LRK53_RS03245 0.83 -0.8
763,184 - +0.7
763,184 - +0.6
763,560 + LRK53_RS03250 0.16 -0.4
763,560 + LRK53_RS03250 0.16 -1.4
763,560 + LRK53_RS03250 0.16 -1.5
763,560 + LRK53_RS03250 0.16 -0.3
763,561 - LRK53_RS03250 0.16 +0.0
763,662 + LRK53_RS03250 0.24 -0.8
763,662 + LRK53_RS03250 0.24 -2.7
763,662 + LRK53_RS03250 0.24 -0.9
763,662 + LRK53_RS03250 0.24 +0.0
763,663 - LRK53_RS03250 0.24 -1.2
763,668 + LRK53_RS03250 0.24 +0.8
763,668 + LRK53_RS03250 0.24 +1.1
763,669 - LRK53_RS03250 0.25 -0.8
763,669 - LRK53_RS03250 0.25 -3.0
763,669 - LRK53_RS03250 0.25 -0.5
763,881 + LRK53_RS03250 0.40 +0.7
763,980 + LRK53_RS03250 0.48 -0.5
763,980 + LRK53_RS03250 0.48 +0.0
763,980 + LRK53_RS03250 0.48 -1.0
763,980 + LRK53_RS03250 0.48 +0.8
763,981 - LRK53_RS03250 0.48 -0.6
763,981 - LRK53_RS03250 0.48 -0.4
763,981 - LRK53_RS03250 0.48 -0.2
763,981 - LRK53_RS03250 0.48 -0.4
763,981 - LRK53_RS03250 0.48 -1.4
763,981 - LRK53_RS03250 0.48 -0.8
763,981 - LRK53_RS03250 0.48 -1.4
763,981 - LRK53_RS03250 0.48 +1.2
763,981 - LRK53_RS03250 0.48 -0.9
763,981 - LRK53_RS03250 0.48 -1.7
763,981 - LRK53_RS03250 0.48 -0.6
764,346 + LRK53_RS03250 0.75 +1.1
764,346 + LRK53_RS03250 0.75 -2.4
764,346 + LRK53_RS03250 0.75 +0.3
764,346 + LRK53_RS03250 0.75 +0.0
764,347 - LRK53_RS03250 0.75 -3.1
764,347 - LRK53_RS03250 0.75 -2.2
764,436 + LRK53_RS03250 0.82 -2.5
764,436 + LRK53_RS03250 0.82 -0.5
764,436 + LRK53_RS03250 0.82 -0.7
764,484 + LRK53_RS03250 0.85 +0.2
764,484 + LRK53_RS03250 0.85 -0.2
764,503 - LRK53_RS03250 0.87 -1.9
764,756 + -2.8
764,756 + -0.8
764,757 - -0.5
764,876 + -1.1
764,877 - -1.6
764,893 - -0.6
765,206 + LRK53_RS03255 0.14 -1.0
765,206 + LRK53_RS03255 0.14 -0.6
765,206 + LRK53_RS03255 0.14 +0.6
765,207 - LRK53_RS03255 0.14 -1.0
765,207 - LRK53_RS03255 0.14 +0.6
765,297 - LRK53_RS03255 0.18 -0.4
765,420 + LRK53_RS03255 0.23 +0.3
765,420 + LRK53_RS03255 0.23 +1.6
765,420 + LRK53_RS03255 0.23 -1.6
765,420 + LRK53_RS03255 0.23 -0.6
765,421 - LRK53_RS03255 0.23 -0.1
765,421 - LRK53_RS03255 0.23 -2.5
765,421 - LRK53_RS03255 0.23 +2.4
765,428 + LRK53_RS03255 0.24 +0.6
765,428 + LRK53_RS03255 0.24 -2.4
765,429 - LRK53_RS03255 0.24 -0.3
765,452 + LRK53_RS03255 0.25 +0.8
765,452 + LRK53_RS03255 0.25 -1.0
765,453 - LRK53_RS03255 0.25 +0.2
765,503 + LRK53_RS03255 0.27 -0.9
765,503 + LRK53_RS03255 0.27 -0.0
765,504 - LRK53_RS03255 0.27 +0.8
765,504 - LRK53_RS03255 0.27 -0.2
765,545 + LRK53_RS03255 0.29 -0.2
765,545 + LRK53_RS03255 0.29 -0.2
765,545 + LRK53_RS03255 0.29 +0.0
765,546 - LRK53_RS03255 0.29 -1.5
765,546 - LRK53_RS03255 0.29 -1.3
765,546 - LRK53_RS03255 0.29 -1.0
765,546 - LRK53_RS03255 0.29 -1.1
765,546 - LRK53_RS03255 0.29 +0.8
765,546 - LRK53_RS03255 0.29 -1.0
765,546 - LRK53_RS03255 0.29 -0.6
765,629 + LRK53_RS03255 0.32 -1.0
765,629 + LRK53_RS03255 0.32 -1.3
765,630 - LRK53_RS03255 0.33 +1.2
765,630 - LRK53_RS03255 0.33 -1.5
765,630 - LRK53_RS03255 0.33 +1.2

Or see this region's nucleotide sequence