Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02345 and LRK53_RS02350 are separated by 28 nucleotides LRK53_RS02350 and LRK53_RS02355 overlap by 1 nucleotides
LRK53_RS02345: LRK53_RS02345 - hydroxymethylglutaryl-CoA reductase, degradative, at 538,535 to 540,874
_RS02345
LRK53_RS02350: LRK53_RS02350 - hypothetical protein, at 540,903 to 541,922
_RS02350
LRK53_RS02355: LRK53_RS02355 - diphosphomevalonate decarboxylase, at 541,922 to 542,914
_RS02355
Position (kb) 540
541
542 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 540.241 kb on + strand, within LRK53_RS02345 at 540.241 kb on + strand, within LRK53_RS02345 at 540.242 kb on - strand, within LRK53_RS02345 at 540.302 kb on + strand, within LRK53_RS02345 at 540.302 kb on + strand, within LRK53_RS02345 at 540.302 kb on + strand, within LRK53_RS02345 at 540.302 kb on + strand, within LRK53_RS02345 at 540.302 kb on + strand, within LRK53_RS02345 at 540.302 kb on + strand, within LRK53_RS02345 at 540.302 kb on + strand, within LRK53_RS02345 at 540.302 kb on + strand, within LRK53_RS02345 at 540.302 kb on + strand, within LRK53_RS02345 at 540.303 kb on - strand, within LRK53_RS02345 at 540.303 kb on - strand, within LRK53_RS02345 at 540.303 kb on - strand, within LRK53_RS02345 at 540.303 kb on - strand, within LRK53_RS02345 at 540.303 kb on - strand, within LRK53_RS02345 at 540.303 kb on - strand, within LRK53_RS02345 at 540.303 kb on - strand, within LRK53_RS02345 at 540.303 kb on - strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.561 kb on + strand, within LRK53_RS02345 at 540.562 kb on - strand, within LRK53_RS02345 at 540.562 kb on - strand, within LRK53_RS02345 at 540.562 kb on - strand, within LRK53_RS02345 at 540.562 kb on - strand, within LRK53_RS02345 at 540.562 kb on - strand, within LRK53_RS02345 at 540.562 kb on - strand, within LRK53_RS02345 at 540.562 kb on - strand, within LRK53_RS02345 at 540.890 kb on + strand at 540.890 kb on + strand at 540.890 kb on + strand at 540.890 kb on + strand at 540.890 kb on + strand at 540.890 kb on + strand at 540.891 kb on - strand at 540.891 kb on - strand at 540.891 kb on - strand at 540.939 kb on + strand at 540.940 kb on - strand at 540.940 kb on - strand at 541.054 kb on + strand, within LRK53_RS02350 at 541.054 kb on + strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.394 kb on - strand, within LRK53_RS02350 at 541.786 kb on + strand, within LRK53_RS02350 at 541.873 kb on + strand at 541.873 kb on + strand at 541.874 kb on - strand at 542.154 kb on + strand, within LRK53_RS02355 at 542.155 kb on - strand, within LRK53_RS02355 at 542.155 kb on - strand, within LRK53_RS02355 at 542.155 kb on - strand, within LRK53_RS02355 at 542.304 kb on + strand, within LRK53_RS02355 at 542.304 kb on + strand, within LRK53_RS02355 at 542.305 kb on - strand, within LRK53_RS02355 at 542.868 kb on + strand at 542.868 kb on + strand at 542.868 kb on + strand at 542.868 kb on + strand at 542.868 kb on + strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 540,241 + LRK53_RS02345 0.73 -0.8 540,241 + LRK53_RS02345 0.73 +1.2 540,242 - LRK53_RS02345 0.73 -2.3 540,302 + LRK53_RS02345 0.76 -1.0 540,302 + LRK53_RS02345 0.76 -2.5 540,302 + LRK53_RS02345 0.76 -1.3 540,302 + LRK53_RS02345 0.76 -3.3 540,302 + LRK53_RS02345 0.76 +0.0 540,302 + LRK53_RS02345 0.76 -2.3 540,302 + LRK53_RS02345 0.76 +0.4 540,302 + LRK53_RS02345 0.76 -1.3 540,302 + LRK53_RS02345 0.76 -0.7 540,303 - LRK53_RS02345 0.76 +0.2 540,303 - LRK53_RS02345 0.76 -1.3 540,303 - LRK53_RS02345 0.76 +0.1 540,303 - LRK53_RS02345 0.76 +1.2 540,303 - LRK53_RS02345 0.76 +0.5 540,303 - LRK53_RS02345 0.76 -1.5 540,303 - LRK53_RS02345 0.76 -1.0 540,303 - LRK53_RS02345 0.76 -1.9 540,561 + LRK53_RS02345 0.87 +0.5 540,561 + LRK53_RS02345 0.87 -2.1 540,561 + LRK53_RS02345 0.87 +0.5 540,561 + LRK53_RS02345 0.87 -1.1 540,561 + LRK53_RS02345 0.87 -0.3 540,561 + LRK53_RS02345 0.87 +0.7 540,561 + LRK53_RS02345 0.87 -1.9 540,561 + LRK53_RS02345 0.87 -0.5 540,561 + LRK53_RS02345 0.87 -0.0 540,561 + LRK53_RS02345 0.87 -2.2 540,561 + LRK53_RS02345 0.87 -1.4 540,561 + LRK53_RS02345 0.87 +0.5 540,561 + LRK53_RS02345 0.87 -1.9 540,562 - LRK53_RS02345 0.87 -3.4 540,562 - LRK53_RS02345 0.87 -0.6 540,562 - LRK53_RS02345 0.87 -0.2 540,562 - LRK53_RS02345 0.87 +0.2 540,562 - LRK53_RS02345 0.87 +0.2 540,562 - LRK53_RS02345 0.87 -2.1 540,562 - LRK53_RS02345 0.87 -1.1 540,890 + -0.3 540,890 + -1.0 540,890 + -0.4 540,890 + +0.4 540,890 + +0.5 540,890 + +1.4 540,891 - -0.2 540,891 - +0.2 540,891 - +0.1 540,939 + -1.3 540,940 - +0.7 540,940 - +0.2 541,054 + LRK53_RS02350 0.15 +1.3 541,054 + LRK53_RS02350 0.15 +0.5 541,055 - LRK53_RS02350 0.15 -1.1 541,055 - LRK53_RS02350 0.15 +0.1 541,055 - LRK53_RS02350 0.15 +1.2 541,055 - LRK53_RS02350 0.15 -1.1 541,055 - LRK53_RS02350 0.15 -0.8 541,055 - LRK53_RS02350 0.15 -1.5 541,055 - LRK53_RS02350 0.15 -0.3 541,394 - LRK53_RS02350 0.48 +0.6 541,786 + LRK53_RS02350 0.87 -1.1 541,873 + -0.6 541,873 + -0.3 541,874 - -1.4 542,154 + LRK53_RS02355 0.23 -0.6 542,155 - LRK53_RS02355 0.23 +1.2 542,155 - LRK53_RS02355 0.23 -1.1 542,155 - LRK53_RS02355 0.23 -0.4 542,304 + LRK53_RS02355 0.38 +1.7 542,304 + LRK53_RS02355 0.38 -0.4 542,305 - LRK53_RS02355 0.39 -1.7 542,868 + -0.6 542,868 + -1.0 542,868 + -1.0 542,868 + -2.0 542,868 + -0.7 542,869 - -0.1 542,869 - +0.0 542,869 - +0.0 542,869 - +0.0 542,869 - -1.2 542,869 - -0.6 542,869 - +0.6 542,869 - -0.2 542,869 - -1.9
Or see this region's nucleotide sequence