Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01915 and LRK53_RS01920 are separated by 9 nucleotides LRK53_RS01920 and LRK53_RS01925 are separated by 84 nucleotides LRK53_RS01925 and LRK53_RS01930 are separated by 386 nucleotides
LRK53_RS01915: LRK53_RS01915 - MFS transporter, at 447,605 to 449,479
_RS01915
LRK53_RS01920: LRK53_RS01920 - regulatory signaling modulator protein AmpE, at 449,489 to 450,358
_RS01920
LRK53_RS01925: LRK53_RS01925 - hypothetical protein, at 450,443 to 450,814
_RS01925
LRK53_RS01930: LRK53_RS01930 - NAD(+) diphosphatase, at 451,201 to 452,172
_RS01930
Position (kb) 450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 449.686 kb on - strand, within LRK53_RS01920 at 449.710 kb on + strand, within LRK53_RS01920 at 449.710 kb on + strand, within LRK53_RS01920 at 449.711 kb on - strand, within LRK53_RS01920 at 449.814 kb on + strand, within LRK53_RS01920 at 449.815 kb on - strand, within LRK53_RS01920 at 449.815 kb on - strand, within LRK53_RS01920 at 449.958 kb on + strand, within LRK53_RS01920 at 449.958 kb on + strand, within LRK53_RS01920 at 449.958 kb on + strand, within LRK53_RS01920 at 449.958 kb on + strand, within LRK53_RS01920 at 449.958 kb on + strand, within LRK53_RS01920 at 449.959 kb on - strand, within LRK53_RS01920 at 449.959 kb on - strand, within LRK53_RS01920 at 449.959 kb on - strand, within LRK53_RS01920 at 450.108 kb on + strand, within LRK53_RS01920 at 450.108 kb on + strand, within LRK53_RS01920 at 450.108 kb on + strand, within LRK53_RS01920 at 450.108 kb on + strand, within LRK53_RS01920 at 450.108 kb on + strand, within LRK53_RS01920 at 450.108 kb on + strand, within LRK53_RS01920 at 450.108 kb on + strand, within LRK53_RS01920 at 450.108 kb on + strand, within LRK53_RS01920 at 450.108 kb on + strand, within LRK53_RS01920 at 450.108 kb on + strand, within LRK53_RS01920 at 450.109 kb on - strand, within LRK53_RS01920 at 450.109 kb on - strand, within LRK53_RS01920 at 450.109 kb on - strand, within LRK53_RS01920 at 450.109 kb on - strand, within LRK53_RS01920 at 450.109 kb on - strand, within LRK53_RS01920 at 450.109 kb on - strand, within LRK53_RS01920 at 450.109 kb on - strand, within LRK53_RS01920 at 450.242 kb on - strand, within LRK53_RS01920 at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.392 kb on + strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.393 kb on - strand at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.600 kb on + strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.601 kb on - strand, within LRK53_RS01925 at 450.676 kb on + strand, within LRK53_RS01925 at 450.677 kb on - strand, within LRK53_RS01925 at 450.677 kb on - strand, within LRK53_RS01925 at 450.974 kb on + strand at 451.109 kb on + strand at 451.109 kb on + strand at 451.277 kb on + strand at 451.277 kb on + strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.278 kb on - strand at 451.463 kb on + strand, within LRK53_RS01930 at 451.463 kb on + strand, within LRK53_RS01930 at 451.565 kb on + strand, within LRK53_RS01930 at 451.566 kb on - strand, within LRK53_RS01930 at 451.566 kb on - strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.781 kb on + strand, within LRK53_RS01930 at 451.782 kb on - strand, within LRK53_RS01930 at 451.782 kb on - strand, within LRK53_RS01930
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 449,686 - LRK53_RS01920 0.23 -1.6 449,710 + LRK53_RS01920 0.25 +0.8 449,710 + LRK53_RS01920 0.25 -1.0 449,711 - LRK53_RS01920 0.26 -2.9 449,814 + LRK53_RS01920 0.37 -1.3 449,815 - LRK53_RS01920 0.37 -1.1 449,815 - LRK53_RS01920 0.37 +0.3 449,958 + LRK53_RS01920 0.54 -0.2 449,958 + LRK53_RS01920 0.54 -0.7 449,958 + LRK53_RS01920 0.54 -1.1 449,958 + LRK53_RS01920 0.54 -1.9 449,958 + LRK53_RS01920 0.54 -1.6 449,959 - LRK53_RS01920 0.54 -1.1 449,959 - LRK53_RS01920 0.54 -0.6 449,959 - LRK53_RS01920 0.54 +1.6 450,108 + LRK53_RS01920 0.71 -0.5 450,108 + LRK53_RS01920 0.71 -0.1 450,108 + LRK53_RS01920 0.71 +0.5 450,108 + LRK53_RS01920 0.71 +0.1 450,108 + LRK53_RS01920 0.71 -2.2 450,108 + LRK53_RS01920 0.71 -0.9 450,108 + LRK53_RS01920 0.71 -0.3 450,108 + LRK53_RS01920 0.71 -0.3 450,108 + LRK53_RS01920 0.71 -0.5 450,108 + LRK53_RS01920 0.71 -0.8 450,109 - LRK53_RS01920 0.71 -0.2 450,109 - LRK53_RS01920 0.71 -0.3 450,109 - LRK53_RS01920 0.71 -0.8 450,109 - LRK53_RS01920 0.71 -0.3 450,109 - LRK53_RS01920 0.71 -1.2 450,109 - LRK53_RS01920 0.71 -0.6 450,109 - LRK53_RS01920 0.71 -0.5 450,242 - LRK53_RS01920 0.87 -2.2 450,392 + -0.8 450,392 + +0.5 450,392 + +0.0 450,392 + -0.1 450,392 + -0.2 450,392 + -0.5 450,392 + -1.6 450,392 + -1.3 450,392 + -1.4 450,392 + -0.5 450,392 + -0.6 450,392 + -0.1 450,392 + -1.2 450,392 + -0.5 450,392 + -0.5 450,392 + -1.0 450,393 - -0.8 450,393 - -0.6 450,393 - -1.9 450,393 - +1.4 450,393 - -2.4 450,393 - -1.1 450,393 - -1.6 450,393 - +0.4 450,393 - -0.4 450,393 - +0.1 450,393 - -1.1 450,393 - +0.1 450,393 - -0.8 450,393 - -0.4 450,393 - -1.7 450,600 + LRK53_RS01925 0.42 -1.6 450,600 + LRK53_RS01925 0.42 -0.6 450,600 + LRK53_RS01925 0.42 -1.2 450,600 + LRK53_RS01925 0.42 -1.5 450,600 + LRK53_RS01925 0.42 -0.7 450,600 + LRK53_RS01925 0.42 -1.1 450,601 - LRK53_RS01925 0.42 -1.1 450,601 - LRK53_RS01925 0.42 -0.9 450,601 - LRK53_RS01925 0.42 -0.1 450,601 - LRK53_RS01925 0.42 -2.0 450,601 - LRK53_RS01925 0.42 -1.9 450,601 - LRK53_RS01925 0.42 +0.6 450,601 - LRK53_RS01925 0.42 -0.9 450,601 - LRK53_RS01925 0.42 +0.1 450,601 - LRK53_RS01925 0.42 -0.4 450,601 - LRK53_RS01925 0.42 -1.0 450,676 + LRK53_RS01925 0.63 -1.0 450,677 - LRK53_RS01925 0.63 -1.6 450,677 - LRK53_RS01925 0.63 -0.6 450,974 + +1.2 451,109 + -0.5 451,109 + -0.3 451,277 + +1.8 451,277 + -1.6 451,278 - -1.7 451,278 - -2.3 451,278 - +1.2 451,278 - -0.1 451,278 - -0.1 451,278 - +0.6 451,463 + LRK53_RS01930 0.27 -1.4 451,463 + LRK53_RS01930 0.27 -0.5 451,565 + LRK53_RS01930 0.37 -0.4 451,566 - LRK53_RS01930 0.38 +0.6 451,566 - LRK53_RS01930 0.38 -0.2 451,781 + LRK53_RS01930 0.60 -0.1 451,781 + LRK53_RS01930 0.60 -0.5 451,781 + LRK53_RS01930 0.60 -2.5 451,781 + LRK53_RS01930 0.60 -0.6 451,781 + LRK53_RS01930 0.60 +0.1 451,782 - LRK53_RS01930 0.60 -1.4 451,782 - LRK53_RS01930 0.60 -1.2
Or see this region's nucleotide sequence