Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01760 and LRK53_RS01765 are separated by 65 nucleotides LRK53_RS01765 and LRK53_RS01770 are separated by 95 nucleotides LRK53_RS01770 and LRK53_RS01775 are separated by 10 nucleotides
LRK53_RS01760: LRK53_RS01760 - DUF2333 family protein, at 412,189 to 413,211
_RS01760
LRK53_RS01765: LRK53_RS01765 - inorganic diphosphatase, at 413,277 to 413,816
_RS01765
LRK53_RS01770: LRK53_RS01770 - 2OG-Fe(II) oxygenase, at 413,912 to 414,766
_RS01770
LRK53_RS01775: LRK53_RS01775 - prolyl oligopeptidase family serine peptidase, at 414,777 to 416,909
_RS01775
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 412.939 kb on + strand, within LRK53_RS01760 at 412.939 kb on + strand, within LRK53_RS01760 at 412.939 kb on + strand, within LRK53_RS01760 at 412.939 kb on + strand, within LRK53_RS01760 at 412.940 kb on - strand, within LRK53_RS01760 at 412.954 kb on + strand, within LRK53_RS01760 at 412.955 kb on - strand, within LRK53_RS01760 at 412.955 kb on - strand, within LRK53_RS01760 at 412.955 kb on - strand, within LRK53_RS01760 at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.861 kb on - strand at 413.861 kb on - strand at 414.036 kb on + strand, within LRK53_RS01770 at 414.036 kb on + strand, within LRK53_RS01770 at 414.036 kb on + strand, within LRK53_RS01770 at 414.036 kb on + strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.213 kb on + strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.657 kb on + strand, within LRK53_RS01770 at 414.657 kb on + strand, within LRK53_RS01770 at 414.657 kb on + strand, within LRK53_RS01770 at 414.658 kb on - strand, within LRK53_RS01770 at 414.658 kb on - strand, within LRK53_RS01770 at 414.778 kb on + strand at 414.778 kb on + strand at 414.778 kb on + strand at 414.779 kb on - strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.806 kb on - strand at 414.877 kb on + strand at 414.877 kb on + strand at 414.878 kb on - strand at 414.878 kb on - strand at 414.878 kb on - strand at 414.878 kb on - strand at 414.970 kb on + strand at 414.970 kb on + strand at 414.970 kb on + strand at 414.970 kb on + strand at 414.970 kb on + strand at 414.971 kb on - strand at 414.971 kb on - strand at 414.971 kb on - strand at 414.971 kb on - strand at 415.015 kb on + strand, within LRK53_RS01775 at 415.066 kb on + strand, within LRK53_RS01775 at 415.105 kb on + strand, within LRK53_RS01775 at 415.105 kb on + strand, within LRK53_RS01775 at 415.105 kb on + strand, within LRK53_RS01775 at 415.105 kb on + strand, within LRK53_RS01775 at 415.105 kb on + strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.106 kb on - strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.162 kb on + strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.163 kb on - strand, within LRK53_RS01775 at 415.333 kb on + strand, within LRK53_RS01775 at 415.366 kb on + strand, within LRK53_RS01775 at 415.367 kb on - strand, within LRK53_RS01775 at 415.367 kb on - strand, within LRK53_RS01775 at 415.367 kb on - strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.411 kb on + strand, within LRK53_RS01775 at 415.412 kb on - strand, within LRK53_RS01775 at 415.414 kb on + strand, within LRK53_RS01775 at 415.414 kb on + strand, within LRK53_RS01775 at 415.414 kb on + strand, within LRK53_RS01775 at 415.415 kb on - strand, within LRK53_RS01775 at 415.415 kb on - strand, within LRK53_RS01775 at 415.415 kb on - strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.450 kb on + strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.451 kb on - strand, within LRK53_RS01775 at 415.461 kb on - strand, within LRK53_RS01775 at 415.461 kb on - strand, within LRK53_RS01775 at 415.485 kb on - strand, within LRK53_RS01775 at 415.485 kb on - strand, within LRK53_RS01775 at 415.485 kb on - strand, within LRK53_RS01775 at 415.485 kb on - strand, within LRK53_RS01775 at 415.485 kb on - strand, within LRK53_RS01775 at 415.507 kb on + strand, within LRK53_RS01775 at 415.507 kb on + strand, within LRK53_RS01775 at 415.508 kb on - strand, within LRK53_RS01775 at 415.508 kb on - strand, within LRK53_RS01775 at 415.672 kb on + strand, within LRK53_RS01775 at 415.672 kb on + strand, within LRK53_RS01775 at 415.672 kb on + strand, within LRK53_RS01775 at 415.672 kb on + strand, within LRK53_RS01775 at 415.672 kb on + strand, within LRK53_RS01775
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 412,939 + LRK53_RS01760 0.73 -0.2 412,939 + LRK53_RS01760 0.73 -3.2 412,939 + LRK53_RS01760 0.73 -0.2 412,939 + LRK53_RS01760 0.73 -2.5 412,940 - LRK53_RS01760 0.73 +0.0 412,954 + LRK53_RS01760 0.75 -2.9 412,955 - LRK53_RS01760 0.75 +0.4 412,955 - LRK53_RS01760 0.75 -1.1 412,955 - LRK53_RS01760 0.75 -0.8 413,152 + -2.6 413,152 + +0.0 413,152 + -0.5 413,152 + -2.7 413,152 + -1.7 413,152 + -1.6 413,152 + -0.9 413,152 + -0.6 413,152 + -1.9 413,152 + -2.7 413,152 + -2.2 413,152 + -1.9 413,152 + -1.6 413,152 + +2.0 413,152 + -0.1 413,152 + -1.0 413,152 + -0.9 413,152 + -0.2 413,152 + -0.9 413,152 + +1.1 413,153 - -0.1 413,153 - -2.2 413,153 - -1.6 413,153 - -1.0 413,153 - -1.7 413,153 - -2.4 413,153 - -1.7 413,153 - +0.0 413,153 - -1.1 413,153 - -0.6 413,153 - -0.2 413,153 - +0.2 413,153 - -0.2 413,153 - -0.6 413,153 - -2.2 413,153 - -0.8 413,153 - -0.7 413,153 - +0.8 413,153 - -0.4 413,153 - -1.0 413,153 - -2.3 413,153 - -0.5 413,153 - +1.0 413,153 - -0.5 413,153 - -0.8 413,153 - -0.3 413,153 - +1.1 413,256 + -1.3 413,256 + +1.4 413,256 + -0.9 413,256 + -0.9 413,256 + +0.8 413,256 + -0.2 413,256 + -1.0 413,256 + -0.5 413,256 + -1.8 413,256 + -0.7 413,256 + -2.0 413,256 + -1.5 413,256 + -0.2 413,256 + +1.4 413,256 + +0.2 413,256 + +1.0 413,256 + -1.8 413,256 + -2.1 413,256 + -0.3 413,256 + -0.6 413,256 + -0.8 413,256 + -1.0 413,256 + +0.0 413,256 + +0.4 413,256 + -0.2 413,256 + -1.1 413,256 + -1.3 413,256 + -1.5 413,256 + +0.1 413,257 - -1.4 413,257 - -1.5 413,257 - +0.6 413,257 - -2.4 413,257 - -0.9 413,257 - -0.0 413,257 - -1.7 413,257 - -0.2 413,257 - -0.2 413,257 - -1.1 413,257 - -0.4 413,257 - -1.1 413,257 - -1.2 413,257 - -0.8 413,257 - -2.5 413,257 - -0.4 413,257 - -1.6 413,257 - +0.0 413,257 - -1.8 413,257 - -1.5 413,257 - +0.9 413,257 - -0.7 413,257 - +1.4 413,257 - -1.4 413,257 - -1.8 413,257 - -1.8 413,257 - +0.5 413,860 + -0.8 413,860 + -1.5 413,860 + -1.0 413,860 + -0.3 413,860 + -1.1 413,860 + -0.5 413,861 - -0.6 413,861 - -2.7 414,036 + LRK53_RS01770 0.15 -0.8 414,036 + LRK53_RS01770 0.15 -0.2 414,036 + LRK53_RS01770 0.15 -1.0 414,036 + LRK53_RS01770 0.15 -1.9 414,037 - LRK53_RS01770 0.15 -0.7 414,037 - LRK53_RS01770 0.15 +1.0 414,037 - LRK53_RS01770 0.15 -0.9 414,037 - LRK53_RS01770 0.15 -1.0 414,037 - LRK53_RS01770 0.15 +0.9 414,120 + LRK53_RS01770 0.24 -0.1 414,120 + LRK53_RS01770 0.24 -1.0 414,120 + LRK53_RS01770 0.24 -1.8 414,120 + LRK53_RS01770 0.24 -2.1 414,120 + LRK53_RS01770 0.24 -1.0 414,120 + LRK53_RS01770 0.24 -1.1 414,120 + LRK53_RS01770 0.24 -0.0 414,120 + LRK53_RS01770 0.24 -2.1 414,120 + LRK53_RS01770 0.24 +1.4 414,121 - LRK53_RS01770 0.24 +0.1 414,121 - LRK53_RS01770 0.24 -0.7 414,121 - LRK53_RS01770 0.24 +0.4 414,121 - LRK53_RS01770 0.24 -0.7 414,213 + LRK53_RS01770 0.35 -1.0 414,214 - LRK53_RS01770 0.35 -0.5 414,214 - LRK53_RS01770 0.35 +1.2 414,214 - LRK53_RS01770 0.35 -0.7 414,214 - LRK53_RS01770 0.35 -2.7 414,231 + LRK53_RS01770 0.37 -2.2 414,231 + LRK53_RS01770 0.37 -0.6 414,231 + LRK53_RS01770 0.37 +0.1 414,231 + LRK53_RS01770 0.37 -0.1 414,231 + LRK53_RS01770 0.37 +0.5 414,231 + LRK53_RS01770 0.37 -2.4 414,231 + LRK53_RS01770 0.37 -1.9 414,231 + LRK53_RS01770 0.37 -0.9 414,232 - LRK53_RS01770 0.37 -1.0 414,232 - LRK53_RS01770 0.37 -0.9 414,232 - LRK53_RS01770 0.37 -1.8 414,232 - LRK53_RS01770 0.37 -0.6 414,232 - LRK53_RS01770 0.37 -1.1 414,657 + LRK53_RS01770 0.87 +0.1 414,657 + LRK53_RS01770 0.87 -1.6 414,657 + LRK53_RS01770 0.87 -1.9 414,658 - LRK53_RS01770 0.87 -0.2 414,658 - LRK53_RS01770 0.87 -1.3 414,778 + -1.8 414,778 + +2.0 414,778 + -3.5 414,779 - -0.7 414,805 + +0.2 414,805 + -0.5 414,805 + -3.0 414,805 + -1.0 414,805 + +0.5 414,806 - -0.8 414,877 + -1.4 414,877 + -1.0 414,878 - -1.1 414,878 - -0.2 414,878 - +0.2 414,878 - -0.8 414,970 + +0.5 414,970 + +0.4 414,970 + -1.6 414,970 + +0.2 414,970 + -1.2 414,971 - -0.9 414,971 - +0.2 414,971 - -1.1 414,971 - -0.4 415,015 + LRK53_RS01775 0.11 -1.6 415,066 + LRK53_RS01775 0.14 -0.8 415,105 + LRK53_RS01775 0.15 -0.4 415,105 + LRK53_RS01775 0.15 +1.4 415,105 + LRK53_RS01775 0.15 +0.3 415,105 + LRK53_RS01775 0.15 -1.9 415,105 + LRK53_RS01775 0.15 -0.4 415,106 - LRK53_RS01775 0.15 -2.8 415,106 - LRK53_RS01775 0.15 -0.4 415,106 - LRK53_RS01775 0.15 +1.6 415,106 - LRK53_RS01775 0.15 -0.7 415,106 - LRK53_RS01775 0.15 -0.6 415,106 - LRK53_RS01775 0.15 -1.2 415,106 - LRK53_RS01775 0.15 -2.2 415,162 + LRK53_RS01775 0.18 -1.8 415,162 + LRK53_RS01775 0.18 -1.0 415,162 + LRK53_RS01775 0.18 -1.6 415,162 + LRK53_RS01775 0.18 +0.2 415,162 + LRK53_RS01775 0.18 +0.6 415,162 + LRK53_RS01775 0.18 -0.6 415,162 + LRK53_RS01775 0.18 -0.9 415,162 + LRK53_RS01775 0.18 +1.0 415,162 + LRK53_RS01775 0.18 +0.5 415,163 - LRK53_RS01775 0.18 -0.7 415,163 - LRK53_RS01775 0.18 -0.9 415,163 - LRK53_RS01775 0.18 -0.6 415,163 - LRK53_RS01775 0.18 -0.6 415,163 - LRK53_RS01775 0.18 -1.3 415,163 - LRK53_RS01775 0.18 -1.0 415,163 - LRK53_RS01775 0.18 -1.0 415,333 + LRK53_RS01775 0.26 +0.3 415,366 + LRK53_RS01775 0.28 +0.1 415,367 - LRK53_RS01775 0.28 -1.8 415,367 - LRK53_RS01775 0.28 -0.7 415,367 - LRK53_RS01775 0.28 -0.5 415,411 + LRK53_RS01775 0.30 -0.5 415,411 + LRK53_RS01775 0.30 +1.5 415,411 + LRK53_RS01775 0.30 -1.1 415,411 + LRK53_RS01775 0.30 -2.2 415,411 + LRK53_RS01775 0.30 +1.2 415,412 - LRK53_RS01775 0.30 -1.8 415,414 + LRK53_RS01775 0.30 -0.3 415,414 + LRK53_RS01775 0.30 -0.9 415,414 + LRK53_RS01775 0.30 -1.8 415,415 - LRK53_RS01775 0.30 -0.6 415,415 - LRK53_RS01775 0.30 -1.6 415,415 - LRK53_RS01775 0.30 -0.2 415,450 + LRK53_RS01775 0.32 -0.5 415,450 + LRK53_RS01775 0.32 -1.0 415,450 + LRK53_RS01775 0.32 -2.1 415,450 + LRK53_RS01775 0.32 -0.1 415,450 + LRK53_RS01775 0.32 -1.0 415,450 + LRK53_RS01775 0.32 +1.6 415,450 + LRK53_RS01775 0.32 -1.0 415,450 + LRK53_RS01775 0.32 -0.2 415,450 + LRK53_RS01775 0.32 -1.4 415,450 + LRK53_RS01775 0.32 -1.0 415,450 + LRK53_RS01775 0.32 -1.8 415,450 + LRK53_RS01775 0.32 +0.8 415,451 - LRK53_RS01775 0.32 -1.0 415,451 - LRK53_RS01775 0.32 -0.1 415,451 - LRK53_RS01775 0.32 -0.6 415,451 - LRK53_RS01775 0.32 -0.7 415,451 - LRK53_RS01775 0.32 +0.4 415,451 - LRK53_RS01775 0.32 -1.6 415,451 - LRK53_RS01775 0.32 +1.1 415,461 - LRK53_RS01775 0.32 -0.9 415,461 - LRK53_RS01775 0.32 -1.3 415,485 - LRK53_RS01775 0.33 -2.2 415,485 - LRK53_RS01775 0.33 -0.9 415,485 - LRK53_RS01775 0.33 +0.0 415,485 - LRK53_RS01775 0.33 +0.8 415,485 - LRK53_RS01775 0.33 +0.2 415,507 + LRK53_RS01775 0.34 -0.5 415,507 + LRK53_RS01775 0.34 +1.6 415,508 - LRK53_RS01775 0.34 +1.4 415,508 - LRK53_RS01775 0.34 -0.6 415,672 + LRK53_RS01775 0.42 -0.5 415,672 + LRK53_RS01775 0.42 -1.4 415,672 + LRK53_RS01775 0.42 -0.9 415,672 + LRK53_RS01775 0.42 -0.1 415,672 + LRK53_RS01775 0.42 +1.0
Or see this region's nucleotide sequence