Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01185 and LRK53_RS01190 are separated by 56 nucleotides LRK53_RS01190 and LRK53_RS01195 overlap by 4 nucleotides LRK53_RS01195 and LRK53_RS01200 are separated by 53 nucleotides LRK53_RS01200 and LRK53_RS01205 are separated by 120 nucleotides
LRK53_RS01185: LRK53_RS01185 - GAF domain-containing protein, at 294,444 to 294,935
_RS01185
LRK53_RS01190: LRK53_RS01190 - hypothetical protein, at 294,992 to 295,183
_RS01190
LRK53_RS01195: LRK53_RS01195 - dethiobiotin synthase, at 295,180 to 295,857
_RS01195
LRK53_RS01200: LRK53_RS01200 - hypothetical protein, at 295,911 to 296,258
_RS01200
LRK53_RS01205: LRK53_RS01205 - peptidyl-dipeptidase Dcp, at 296,379 to 298,562
_RS01205
Position (kb) 295
296
297 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.911 kb on - strand at 294.961 kb on + strand at 294.961 kb on + strand at 294.962 kb on - strand at 294.962 kb on - strand at 294.962 kb on - strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.964 kb on + strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 294.965 kb on - strand at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.118 kb on + strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.119 kb on - strand, within LRK53_RS01190 at 295.384 kb on + strand, within LRK53_RS01195 at 295.384 kb on + strand, within LRK53_RS01195 at 295.826 kb on - strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.926 kb on + strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.927 kb on - strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.929 kb on + strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.930 kb on - strand at 295.983 kb on + strand, within LRK53_RS01200 at 296.208 kb on + strand, within LRK53_RS01200 at 296.208 kb on + strand, within LRK53_RS01200 at 296.208 kb on + strand, within LRK53_RS01200 at 296.208 kb on + strand, within LRK53_RS01200 at 296.208 kb on + strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.209 kb on - strand, within LRK53_RS01200 at 296.317 kb on + strand at 296.526 kb on + strand at 296.527 kb on - strand at 296.527 kb on - strand at 296.527 kb on - strand at 296.527 kb on - strand at 296.527 kb on - strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.537 kb on + strand at 296.538 kb on - strand at 296.538 kb on - strand at 296.538 kb on - strand at 296.538 kb on - strand at 296.538 kb on - strand at 296.586 kb on + strand at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.679 kb on + strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.680 kb on - strand, within LRK53_RS01205 at 296.862 kb on + strand, within LRK53_RS01205 at 296.862 kb on + strand, within LRK53_RS01205 at 296.862 kb on + strand, within LRK53_RS01205 at 296.863 kb on - strand, within LRK53_RS01205 at 296.863 kb on - strand, within LRK53_RS01205 at 296.863 kb on - strand, within LRK53_RS01205 at 296.863 kb on - strand, within LRK53_RS01205 at 296.863 kb on - strand, within LRK53_RS01205 at 296.863 kb on - strand, within LRK53_RS01205 at 296.863 kb on - strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.922 kb on + strand, within LRK53_RS01205 at 296.923 kb on - strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.153 kb on + strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205 at 297.154 kb on - strand, within LRK53_RS01205
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 294,911 - -0.7 294,911 - +0.8 294,911 - -2.0 294,911 - -0.7 294,911 - -0.2 294,911 - -1.7 294,911 - -1.4 294,911 - +0.0 294,961 + -2.4 294,961 + -1.7 294,962 - -0.4 294,962 - -0.6 294,962 - +0.1 294,964 + +1.0 294,964 + +0.3 294,964 + -1.0 294,964 + -0.5 294,964 + -2.4 294,964 + -0.6 294,964 + -2.2 294,965 - -1.2 294,965 - -0.2 294,965 - -0.3 294,965 - +0.6 294,965 - -1.6 294,965 - +0.1 294,965 - +0.3 295,118 + LRK53_RS01190 0.66 -0.8 295,118 + LRK53_RS01190 0.66 +0.3 295,118 + LRK53_RS01190 0.66 -1.6 295,118 + LRK53_RS01190 0.66 +2.3 295,118 + LRK53_RS01190 0.66 -0.5 295,118 + LRK53_RS01190 0.66 -2.5 295,118 + LRK53_RS01190 0.66 -1.2 295,118 + LRK53_RS01190 0.66 +0.0 295,118 + LRK53_RS01190 0.66 -1.3 295,118 + LRK53_RS01190 0.66 +0.1 295,118 + LRK53_RS01190 0.66 -0.2 295,119 - LRK53_RS01190 0.66 +0.5 295,119 - LRK53_RS01190 0.66 -0.6 295,119 - LRK53_RS01190 0.66 -1.8 295,119 - LRK53_RS01190 0.66 -0.2 295,119 - LRK53_RS01190 0.66 -0.1 295,119 - LRK53_RS01190 0.66 -0.6 295,119 - LRK53_RS01190 0.66 -0.9 295,384 + LRK53_RS01195 0.30 +1.0 295,384 + LRK53_RS01195 0.30 -1.9 295,826 - +1.3 295,926 + +2.4 295,926 + +0.5 295,926 + +0.4 295,926 + -0.7 295,926 + +0.0 295,927 - -1.1 295,927 - -2.6 295,927 - -1.0 295,927 - +4.4 295,927 - -0.7 295,927 - -0.8 295,927 - +2.1 295,929 + -0.3 295,929 + -2.4 295,929 + -0.1 295,929 + +0.8 295,929 + +2.5 295,929 + -0.5 295,929 + -0.5 295,929 + +0.1 295,929 + -0.1 295,929 + -1.9 295,929 + +0.3 295,929 + -1.3 295,929 + -0.3 295,929 + +0.7 295,929 + -0.6 295,929 + -1.0 295,929 + -1.8 295,929 + -0.5 295,929 + -2.0 295,929 + -1.1 295,929 + -1.3 295,929 + +0.5 295,929 + -1.4 295,930 - +0.3 295,930 - -1.4 295,930 - -0.1 295,930 - -2.9 295,930 - +0.6 295,930 - +2.8 295,930 - -1.2 295,930 - -2.3 295,930 - -0.5 295,930 - +1.1 295,930 - -0.8 295,930 - -1.3 295,930 - -1.2 295,930 - -0.9 295,930 - +0.7 295,930 - -0.6 295,930 - -0.9 295,930 - -0.5 295,930 - -2.7 295,930 - -0.5 295,930 - -2.3 295,930 - -0.7 295,930 - +0.7 295,930 - -0.7 295,930 - -1.1 295,930 - -1.1 295,930 - -1.4 295,930 - -1.4 295,930 - +0.0 295,930 - -1.0 295,930 - -1.7 295,983 + LRK53_RS01200 0.21 -0.3 296,208 + LRK53_RS01200 0.85 +0.3 296,208 + LRK53_RS01200 0.85 -0.6 296,208 + LRK53_RS01200 0.85 -1.1 296,208 + LRK53_RS01200 0.85 -1.3 296,208 + LRK53_RS01200 0.85 -1.7 296,209 - LRK53_RS01200 0.86 +0.4 296,209 - LRK53_RS01200 0.86 -2.0 296,209 - LRK53_RS01200 0.86 +0.3 296,209 - LRK53_RS01200 0.86 -0.9 296,209 - LRK53_RS01200 0.86 -0.5 296,209 - LRK53_RS01200 0.86 -0.5 296,209 - LRK53_RS01200 0.86 -1.9 296,209 - LRK53_RS01200 0.86 -0.5 296,209 - LRK53_RS01200 0.86 +0.0 296,209 - LRK53_RS01200 0.86 -1.4 296,209 - LRK53_RS01200 0.86 -1.4 296,209 - LRK53_RS01200 0.86 -0.1 296,317 + +0.0 296,526 + +0.5 296,527 - -3.8 296,527 - -1.1 296,527 - -1.2 296,527 - -0.6 296,527 - +2.0 296,537 + -0.4 296,537 + -0.8 296,537 + -0.3 296,537 + -0.4 296,537 + -0.2 296,537 + +0.1 296,537 + -1.3 296,537 + -0.2 296,537 + -0.8 296,537 + +0.5 296,537 + -1.3 296,537 + +1.4 296,537 + +0.4 296,538 - -1.4 296,538 - +0.9 296,538 - +0.4 296,538 - -0.9 296,538 - -1.0 296,586 + -2.1 296,679 + LRK53_RS01205 0.14 -0.1 296,679 + LRK53_RS01205 0.14 -1.1 296,679 + LRK53_RS01205 0.14 -1.7 296,679 + LRK53_RS01205 0.14 -1.2 296,679 + LRK53_RS01205 0.14 +1.4 296,679 + LRK53_RS01205 0.14 +2.0 296,679 + LRK53_RS01205 0.14 -0.7 296,679 + LRK53_RS01205 0.14 +0.8 296,679 + LRK53_RS01205 0.14 -1.2 296,679 + LRK53_RS01205 0.14 -0.8 296,679 + LRK53_RS01205 0.14 -0.7 296,679 + LRK53_RS01205 0.14 -0.5 296,679 + LRK53_RS01205 0.14 +0.4 296,679 + LRK53_RS01205 0.14 -0.3 296,679 + LRK53_RS01205 0.14 +1.8 296,679 + LRK53_RS01205 0.14 -0.8 296,679 + LRK53_RS01205 0.14 -0.8 296,679 + LRK53_RS01205 0.14 -2.2 296,679 + LRK53_RS01205 0.14 +1.7 296,680 - LRK53_RS01205 0.14 -1.0 296,680 - LRK53_RS01205 0.14 +0.5 296,680 - LRK53_RS01205 0.14 -1.3 296,680 - LRK53_RS01205 0.14 +0.4 296,680 - LRK53_RS01205 0.14 -0.7 296,680 - LRK53_RS01205 0.14 -1.7 296,680 - LRK53_RS01205 0.14 +1.2 296,680 - LRK53_RS01205 0.14 -0.2 296,680 - LRK53_RS01205 0.14 -0.7 296,680 - LRK53_RS01205 0.14 -0.5 296,680 - LRK53_RS01205 0.14 +0.0 296,680 - LRK53_RS01205 0.14 -0.5 296,680 - LRK53_RS01205 0.14 -3.0 296,862 + LRK53_RS01205 0.22 +0.2 296,862 + LRK53_RS01205 0.22 +1.8 296,862 + LRK53_RS01205 0.22 -0.3 296,863 - LRK53_RS01205 0.22 -0.7 296,863 - LRK53_RS01205 0.22 -1.7 296,863 - LRK53_RS01205 0.22 +1.2 296,863 - LRK53_RS01205 0.22 +0.3 296,863 - LRK53_RS01205 0.22 +0.1 296,863 - LRK53_RS01205 0.22 -3.0 296,863 - LRK53_RS01205 0.22 -1.3 296,922 + LRK53_RS01205 0.25 +0.6 296,922 + LRK53_RS01205 0.25 -0.8 296,922 + LRK53_RS01205 0.25 -1.5 296,922 + LRK53_RS01205 0.25 -0.4 296,922 + LRK53_RS01205 0.25 -3.2 296,923 - LRK53_RS01205 0.25 -2.2 297,153 + LRK53_RS01205 0.35 +1.0 297,153 + LRK53_RS01205 0.35 -0.2 297,153 + LRK53_RS01205 0.35 +0.8 297,153 + LRK53_RS01205 0.35 -0.8 297,153 + LRK53_RS01205 0.35 +0.0 297,153 + LRK53_RS01205 0.35 -0.7 297,153 + LRK53_RS01205 0.35 +0.0 297,153 + LRK53_RS01205 0.35 +1.3 297,153 + LRK53_RS01205 0.35 -1.9 297,153 + LRK53_RS01205 0.35 -3.0 297,154 - LRK53_RS01205 0.35 -2.3 297,154 - LRK53_RS01205 0.35 +0.1 297,154 - LRK53_RS01205 0.35 -0.9 297,154 - LRK53_RS01205 0.35 -0.3 297,154 - LRK53_RS01205 0.35 +0.0 297,154 - LRK53_RS01205 0.35 -0.7 297,154 - LRK53_RS01205 0.35 -0.9 297,154 - LRK53_RS01205 0.35 -0.3 297,154 - LRK53_RS01205 0.35 -0.3 297,154 - LRK53_RS01205 0.35 -1.0 297,154 - LRK53_RS01205 0.35 -0.5 297,154 - LRK53_RS01205 0.35 +0.0 297,154 - LRK53_RS01205 0.35 +0.0 297,154 - LRK53_RS01205 0.35 -1.0 297,154 - LRK53_RS01205 0.35 -1.1 297,154 - LRK53_RS01205 0.35 +0.8 297,154 - LRK53_RS01205 0.35 -1.2 297,154 - LRK53_RS01205 0.35 -0.3
Or see this region's nucleotide sequence