Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00375 and LRK53_RS00380 are separated by 48 nucleotides LRK53_RS00380 and LRK53_RS00385 are separated by 51 nucleotides LRK53_RS00385 and LRK53_RS00390 are separated by 185 nucleotides
LRK53_RS00375: LRK53_RS00375 - NAD(P)-dependent oxidoreductase, at 85,610 to 86,221
_RS00375
LRK53_RS00380: LRK53_RS00380 - DUF308 domain-containing protein, at 86,270 to 86,812
_RS00380
LRK53_RS00385: LRK53_RS00385 - aldehyde dehydrogenase family protein, at 86,864 to 88,348
_RS00385
LRK53_RS00390: LRK53_RS00390 - 4,5-DOPA dioxygenase extradiol, at 88,534 to 89,331
_RS00390
Position (kb) 86
87
88
89 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 85.940 kb on + strand, within LRK53_RS00375 at 85.941 kb on - strand, within LRK53_RS00375 at 85.941 kb on - strand, within LRK53_RS00375 at 85.941 kb on - strand, within LRK53_RS00375 at 86.283 kb on + strand at 86.283 kb on + strand at 86.283 kb on + strand at 86.284 kb on - strand at 86.284 kb on - strand at 86.631 kb on + strand, within LRK53_RS00380 at 86.806 kb on + strand at 86.807 kb on - strand at 86.844 kb on + strand at 86.844 kb on + strand at 86.844 kb on + strand at 86.844 kb on + strand at 86.844 kb on + strand at 86.844 kb on + strand at 86.845 kb on - strand at 86.845 kb on - strand at 86.845 kb on - strand at 86.845 kb on - strand at 86.857 kb on + strand at 86.857 kb on + strand at 86.857 kb on + strand at 86.857 kb on + strand at 86.857 kb on + strand at 86.857 kb on + strand at 86.857 kb on + strand at 86.857 kb on + strand at 86.858 kb on - strand at 86.858 kb on - strand at 86.858 kb on - strand at 86.865 kb on + strand at 86.865 kb on + strand at 86.866 kb on - strand at 86.874 kb on + strand at 86.875 kb on - strand at 86.986 kb on + strand at 86.987 kb on - strand at 86.987 kb on - strand at 86.987 kb on - strand at 86.987 kb on - strand at 87.056 kb on + strand, within LRK53_RS00385 at 87.056 kb on + strand, within LRK53_RS00385 at 87.056 kb on + strand, within LRK53_RS00385 at 87.056 kb on + strand, within LRK53_RS00385 at 87.056 kb on + strand, within LRK53_RS00385 at 87.056 kb on + strand, within LRK53_RS00385 at 87.056 kb on + strand, within LRK53_RS00385 at 87.057 kb on - strand, within LRK53_RS00385 at 87.057 kb on - strand, within LRK53_RS00385 at 87.057 kb on - strand, within LRK53_RS00385 at 87.057 kb on - strand, within LRK53_RS00385 at 87.103 kb on - strand, within LRK53_RS00385 at 87.678 kb on + strand, within LRK53_RS00385 at 87.678 kb on + strand, within LRK53_RS00385 at 87.678 kb on + strand, within LRK53_RS00385 at 87.678 kb on + strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.679 kb on - strand, within LRK53_RS00385 at 87.966 kb on + strand, within LRK53_RS00385 at 88.236 kb on + strand at 88.237 kb on - strand at 88.237 kb on - strand at 88.317 kb on + strand at 88.317 kb on + strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.318 kb on - strand at 88.348 kb on + strand at 88.348 kb on + strand at 88.348 kb on + strand at 88.349 kb on - strand at 88.477 kb on - strand at 88.477 kb on - strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.497 kb on + strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.498 kb on - strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.505 kb on + strand at 88.506 kb on - strand at 88.506 kb on - strand at 88.506 kb on - strand at 88.548 kb on + strand at 88.548 kb on + strand at 88.549 kb on - strand at 88.696 kb on + strand, within LRK53_RS00390 at 88.696 kb on + strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.697 kb on - strand, within LRK53_RS00390 at 88.786 kb on + strand, within LRK53_RS00390 at 88.787 kb on - strand, within LRK53_RS00390 at 88.787 kb on - strand, within LRK53_RS00390 at 88.909 kb on + strand, within LRK53_RS00390 at 88.910 kb on - strand, within LRK53_RS00390 at 88.910 kb on - strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.062 kb on + strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.063 kb on - strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.167 kb on + strand, within LRK53_RS00390 at 89.168 kb on - strand, within LRK53_RS00390 at 89.168 kb on - strand, within LRK53_RS00390 at 89.168 kb on - strand, within LRK53_RS00390 at 89.218 kb on + strand, within LRK53_RS00390 at 89.218 kb on + strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.219 kb on - strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.233 kb on + strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.234 kb on - strand, within LRK53_RS00390 at 89.287 kb on - strand at 89.343 kb on + strand at 89.343 kb on + strand at 89.344 kb on - strand at 89.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 85,940 + LRK53_RS00375 0.54 -1.5 85,941 - LRK53_RS00375 0.54 +0.5 85,941 - LRK53_RS00375 0.54 -0.9 85,941 - LRK53_RS00375 0.54 -0.2 86,283 + -1.0 86,283 + +0.2 86,283 + -0.8 86,284 - +0.6 86,284 - -0.5 86,631 + LRK53_RS00380 0.66 +0.2 86,806 + -0.3 86,807 - -0.1 86,844 + -0.5 86,844 + -1.2 86,844 + -1.9 86,844 + +0.6 86,844 + +0.4 86,844 + -1.7 86,845 - +0.1 86,845 - -0.6 86,845 - +2.0 86,845 - +0.4 86,857 + -1.3 86,857 + -0.5 86,857 + +0.8 86,857 + -0.4 86,857 + -1.9 86,857 + -2.4 86,857 + -1.5 86,857 + -0.6 86,858 - -1.2 86,858 - -0.5 86,858 - -1.0 86,865 + -0.2 86,865 + -0.4 86,866 - +0.8 86,874 + -0.3 86,875 - -1.5 86,986 + -1.6 86,987 - -0.9 86,987 - -2.3 86,987 - -0.5 86,987 - -0.5 87,056 + LRK53_RS00385 0.13 -0.2 87,056 + LRK53_RS00385 0.13 -0.9 87,056 + LRK53_RS00385 0.13 -1.2 87,056 + LRK53_RS00385 0.13 -2.6 87,056 + LRK53_RS00385 0.13 -2.0 87,056 + LRK53_RS00385 0.13 +0.1 87,056 + LRK53_RS00385 0.13 +0.4 87,057 - LRK53_RS00385 0.13 -2.6 87,057 - LRK53_RS00385 0.13 +0.3 87,057 - LRK53_RS00385 0.13 -1.9 87,057 - LRK53_RS00385 0.13 -1.5 87,103 - LRK53_RS00385 0.16 -0.8 87,678 + LRK53_RS00385 0.55 -0.9 87,678 + LRK53_RS00385 0.55 +0.5 87,678 + LRK53_RS00385 0.55 -0.8 87,678 + LRK53_RS00385 0.55 -1.3 87,679 - LRK53_RS00385 0.55 -0.5 87,679 - LRK53_RS00385 0.55 -1.7 87,679 - LRK53_RS00385 0.55 -0.3 87,679 - LRK53_RS00385 0.55 -1.4 87,679 - LRK53_RS00385 0.55 +2.0 87,679 - LRK53_RS00385 0.55 -0.0 87,966 + LRK53_RS00385 0.74 -1.3 88,236 + -1.7 88,237 - -0.5 88,237 - +0.6 88,317 + +1.1 88,317 + -1.6 88,318 - -0.2 88,318 - -0.6 88,318 - -0.9 88,318 - -0.0 88,318 - -0.3 88,318 - +0.7 88,318 - -1.2 88,318 - +0.7 88,348 + -1.4 88,348 + -3.9 88,348 + -0.9 88,349 - +1.8 88,477 - -0.5 88,477 - -2.7 88,497 + -0.9 88,497 + -0.2 88,497 + +0.2 88,497 + -1.2 88,497 + +0.3 88,497 + -0.2 88,497 + -0.6 88,498 - -2.3 88,498 - +0.3 88,498 - +0.3 88,498 - -0.2 88,498 - +0.0 88,498 - -0.6 88,498 - -0.6 88,498 - -0.9 88,498 - -0.3 88,505 + -1.7 88,505 + -1.1 88,505 + -0.5 88,505 + -1.2 88,505 + -1.2 88,505 + -1.4 88,506 - -1.7 88,506 - +2.6 88,506 - -0.4 88,548 + -1.1 88,548 + -0.2 88,549 - -2.1 88,696 + LRK53_RS00390 0.20 -2.0 88,696 + LRK53_RS00390 0.20 -1.7 88,697 - LRK53_RS00390 0.20 -1.4 88,697 - LRK53_RS00390 0.20 +0.5 88,697 - LRK53_RS00390 0.20 -0.4 88,697 - LRK53_RS00390 0.20 -2.3 88,697 - LRK53_RS00390 0.20 -0.2 88,786 + LRK53_RS00390 0.32 -0.6 88,787 - LRK53_RS00390 0.32 -1.6 88,787 - LRK53_RS00390 0.32 -1.4 88,909 + LRK53_RS00390 0.47 -1.8 88,910 - LRK53_RS00390 0.47 -2.8 88,910 - LRK53_RS00390 0.47 -0.3 89,062 + LRK53_RS00390 0.66 -0.7 89,062 + LRK53_RS00390 0.66 -1.6 89,062 + LRK53_RS00390 0.66 -0.8 89,062 + LRK53_RS00390 0.66 +0.7 89,062 + LRK53_RS00390 0.66 -0.9 89,062 + LRK53_RS00390 0.66 +0.5 89,062 + LRK53_RS00390 0.66 -0.2 89,062 + LRK53_RS00390 0.66 -1.1 89,062 + LRK53_RS00390 0.66 -0.3 89,062 + LRK53_RS00390 0.66 -2.8 89,062 + LRK53_RS00390 0.66 -0.5 89,062 + LRK53_RS00390 0.66 -0.5 89,062 + LRK53_RS00390 0.66 -1.5 89,062 + LRK53_RS00390 0.66 -0.5 89,062 + LRK53_RS00390 0.66 +1.1 89,062 + LRK53_RS00390 0.66 -0.7 89,062 + LRK53_RS00390 0.66 -0.3 89,062 + LRK53_RS00390 0.66 -1.3 89,062 + LRK53_RS00390 0.66 -0.3 89,062 + LRK53_RS00390 0.66 -2.2 89,062 + LRK53_RS00390 0.66 -2.2 89,062 + LRK53_RS00390 0.66 -0.6 89,062 + LRK53_RS00390 0.66 -2.3 89,062 + LRK53_RS00390 0.66 -1.7 89,062 + LRK53_RS00390 0.66 -1.1 89,062 + LRK53_RS00390 0.66 -1.4 89,062 + LRK53_RS00390 0.66 -0.3 89,062 + LRK53_RS00390 0.66 -0.3 89,062 + LRK53_RS00390 0.66 +0.9 89,062 + LRK53_RS00390 0.66 +2.2 89,062 + LRK53_RS00390 0.66 -0.5 89,062 + LRK53_RS00390 0.66 -0.7 89,062 + LRK53_RS00390 0.66 +0.8 89,062 + LRK53_RS00390 0.66 -1.6 89,063 - LRK53_RS00390 0.66 -1.7 89,063 - LRK53_RS00390 0.66 -0.5 89,063 - LRK53_RS00390 0.66 -1.7 89,063 - LRK53_RS00390 0.66 -0.6 89,063 - LRK53_RS00390 0.66 -0.4 89,063 - LRK53_RS00390 0.66 -3.0 89,063 - LRK53_RS00390 0.66 -0.3 89,063 - LRK53_RS00390 0.66 -0.5 89,063 - LRK53_RS00390 0.66 -0.5 89,063 - LRK53_RS00390 0.66 -0.6 89,063 - LRK53_RS00390 0.66 +2.2 89,063 - LRK53_RS00390 0.66 -0.3 89,063 - LRK53_RS00390 0.66 +0.8 89,063 - LRK53_RS00390 0.66 +0.3 89,063 - LRK53_RS00390 0.66 -0.5 89,063 - LRK53_RS00390 0.66 -2.3 89,063 - LRK53_RS00390 0.66 -0.2 89,063 - LRK53_RS00390 0.66 -0.3 89,063 - LRK53_RS00390 0.66 -0.6 89,063 - LRK53_RS00390 0.66 -0.5 89,167 + LRK53_RS00390 0.79 -0.3 89,167 + LRK53_RS00390 0.79 +0.0 89,167 + LRK53_RS00390 0.79 -1.8 89,167 + LRK53_RS00390 0.79 +0.5 89,167 + LRK53_RS00390 0.79 -0.5 89,167 + LRK53_RS00390 0.79 -0.5 89,167 + LRK53_RS00390 0.79 -1.9 89,168 - LRK53_RS00390 0.79 -1.7 89,168 - LRK53_RS00390 0.79 +0.1 89,168 - LRK53_RS00390 0.79 -0.6 89,218 + LRK53_RS00390 0.86 -1.7 89,218 + LRK53_RS00390 0.86 -1.7 89,219 - LRK53_RS00390 0.86 -0.1 89,219 - LRK53_RS00390 0.86 -0.9 89,219 - LRK53_RS00390 0.86 -0.5 89,233 + LRK53_RS00390 0.88 -1.3 89,233 + LRK53_RS00390 0.88 -2.4 89,233 + LRK53_RS00390 0.88 -0.1 89,233 + LRK53_RS00390 0.88 -1.6 89,233 + LRK53_RS00390 0.88 +0.0 89,233 + LRK53_RS00390 0.88 -1.9 89,233 + LRK53_RS00390 0.88 -0.2 89,234 - LRK53_RS00390 0.88 -1.6 89,234 - LRK53_RS00390 0.88 -1.5 89,234 - LRK53_RS00390 0.88 -0.0 89,234 - LRK53_RS00390 0.88 +2.3 89,234 - LRK53_RS00390 0.88 +1.1 89,234 - LRK53_RS00390 0.88 -1.0 89,234 - LRK53_RS00390 0.88 -0.8 89,234 - LRK53_RS00390 0.88 +0.3 89,234 - LRK53_RS00390 0.88 -0.3 89,234 - LRK53_RS00390 0.88 -0.6 89,234 - LRK53_RS00390 0.88 -0.7 89,234 - LRK53_RS00390 0.88 +0.0 89,234 - LRK53_RS00390 0.88 -1.1 89,234 - LRK53_RS00390 0.88 +0.4 89,287 - -0.8 89,343 + -0.5 89,343 + -0.6 89,344 - +0.0 89,344 - +0.0
Or see this region's nucleotide sequence