Experiment: planktonic; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18950 and LRK53_RS18955 are separated by 526 nucleotides LRK53_RS18955 and LRK53_RS18960 are separated by 103 nucleotides LRK53_RS18960 and LRK53_RS18965 are separated by 78 nucleotides
LRK53_RS18950: LRK53_RS18950 - hypothetical protein, at 184,134 to 184,583
_RS18950
LRK53_RS18955: LRK53_RS18955 - hypothetical protein, at 185,110 to 185,745
_RS18955
LRK53_RS18960: LRK53_RS18960 - hypothetical protein, at 185,849 to 186,130
_RS18960
LRK53_RS18965: LRK53_RS18965 - hypothetical protein, at 186,209 to 186,907
_RS18965
Position (kb) 185
186 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 184.113 kb on + strand at 184.113 kb on + strand at 184.114 kb on - strand at 184.114 kb on - strand at 184.139 kb on + strand at 184.140 kb on - strand at 184.173 kb on + strand at 184.173 kb on + strand at 184.173 kb on + strand at 184.173 kb on + strand at 184.174 kb on - strand at 184.174 kb on - strand at 184.174 kb on - strand at 184.174 kb on - strand at 184.174 kb on - strand at 184.174 kb on - strand at 184.174 kb on - strand at 184.263 kb on + strand, within LRK53_RS18950 at 184.264 kb on - strand, within LRK53_RS18950 at 184.372 kb on - strand, within LRK53_RS18950 at 184.372 kb on - strand, within LRK53_RS18950 at 184.683 kb on + strand at 184.683 kb on + strand at 184.683 kb on + strand at 184.683 kb on + strand at 184.684 kb on - strand at 184.946 kb on + strand at 184.947 kb on - strand at 184.947 kb on - strand at 185.026 kb on + strand at 185.026 kb on + strand at 185.026 kb on + strand at 185.027 kb on - strand at 185.027 kb on - strand at 185.056 kb on - strand at 185.096 kb on + strand at 185.096 kb on + strand at 185.096 kb on + strand at 185.097 kb on - strand at 185.097 kb on - strand at 185.097 kb on - strand at 185.097 kb on - strand at 185.097 kb on - strand at 185.097 kb on - strand at 185.097 kb on - strand at 185.100 kb on + strand at 185.138 kb on - strand at 185.184 kb on + strand, within LRK53_RS18955 at 185.184 kb on + strand, within LRK53_RS18955 at 185.184 kb on + strand, within LRK53_RS18955 at 185.184 kb on + strand, within LRK53_RS18955 at 185.185 kb on - strand, within LRK53_RS18955 at 185.185 kb on - strand, within LRK53_RS18955 at 185.185 kb on - strand, within LRK53_RS18955 at 185.185 kb on - strand, within LRK53_RS18955 at 185.185 kb on - strand, within LRK53_RS18955 at 185.185 kb on - strand, within LRK53_RS18955 at 185.285 kb on + strand, within LRK53_RS18955 at 185.285 kb on + strand, within LRK53_RS18955 at 185.285 kb on + strand, within LRK53_RS18955 at 185.285 kb on + strand, within LRK53_RS18955 at 185.285 kb on + strand, within LRK53_RS18955 at 185.286 kb on - strand, within LRK53_RS18955 at 185.286 kb on - strand, within LRK53_RS18955 at 185.286 kb on - strand, within LRK53_RS18955 at 185.286 kb on - strand, within LRK53_RS18955 at 185.286 kb on - strand, within LRK53_RS18955 at 185.286 kb on - strand, within LRK53_RS18955 at 185.286 kb on - strand, within LRK53_RS18955 at 185.286 kb on - strand, within LRK53_RS18955 at 185.286 kb on - strand, within LRK53_RS18955 at 185.286 kb on - strand, within LRK53_RS18955 at 185.286 kb on - strand, within LRK53_RS18955 at 185.340 kb on + strand, within LRK53_RS18955 at 185.341 kb on - strand, within LRK53_RS18955 at 185.353 kb on + strand, within LRK53_RS18955 at 185.404 kb on + strand, within LRK53_RS18955 at 185.404 kb on + strand, within LRK53_RS18955 at 185.404 kb on + strand, within LRK53_RS18955 at 185.404 kb on + strand, within LRK53_RS18955 at 185.405 kb on - strand, within LRK53_RS18955 at 185.405 kb on - strand, within LRK53_RS18955 at 185.405 kb on - strand, within LRK53_RS18955 at 185.405 kb on - strand, within LRK53_RS18955 at 185.405 kb on - strand, within LRK53_RS18955 at 185.405 kb on - strand, within LRK53_RS18955 at 185.580 kb on - strand, within LRK53_RS18955 at 185.743 kb on + strand at 185.744 kb on - strand at 185.744 kb on - strand at 185.811 kb on + strand at 185.812 kb on - strand at 185.921 kb on + strand, within LRK53_RS18960 at 186.065 kb on + strand, within LRK53_RS18960 at 186.128 kb on + strand at 186.128 kb on + strand at 186.129 kb on - strand at 186.129 kb on - strand at 186.193 kb on + strand at 186.284 kb on + strand, within LRK53_RS18965 at 186.284 kb on + strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.285 kb on - strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.363 kb on + strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.364 kb on - strand, within LRK53_RS18965 at 186.494 kb on + strand, within LRK53_RS18965 at 186.495 kb on - strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.605 kb on + strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.606 kb on - strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.725 kb on + strand, within LRK53_RS18965 at 186.726 kb on - strand, within LRK53_RS18965 at 186.726 kb on - strand, within LRK53_RS18965
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; remove 184,113 + -0.2 184,113 + -0.9 184,114 - -0.0 184,114 - -0.8 184,139 + +1.0 184,140 - -1.4 184,173 + +3.2 184,173 + -0.0 184,173 + -0.0 184,173 + +0.6 184,174 - -0.6 184,174 - +0.6 184,174 - +0.4 184,174 - -0.4 184,174 - -1.7 184,174 - +0.4 184,174 - -0.9 184,263 + LRK53_RS18950 0.29 -0.4 184,264 - LRK53_RS18950 0.29 -0.5 184,372 - LRK53_RS18950 0.53 -0.5 184,372 - LRK53_RS18950 0.53 +0.2 184,683 + -0.3 184,683 + +3.0 184,683 + -0.6 184,683 + -0.7 184,684 - +0.2 184,946 + -1.0 184,947 - +1.4 184,947 - +0.3 185,026 + +0.4 185,026 + -2.1 185,026 + +1.4 185,027 - +0.1 185,027 - +0.4 185,056 - -0.9 185,096 + +0.3 185,096 + -1.7 185,096 + -1.8 185,097 - +0.4 185,097 - -2.5 185,097 - -0.1 185,097 - -0.8 185,097 - +1.0 185,097 - +0.0 185,097 - -0.1 185,100 + -0.5 185,138 - -0.4 185,184 + LRK53_RS18955 0.12 -1.7 185,184 + LRK53_RS18955 0.12 -1.2 185,184 + LRK53_RS18955 0.12 -0.0 185,184 + LRK53_RS18955 0.12 -0.7 185,185 - LRK53_RS18955 0.12 -0.2 185,185 - LRK53_RS18955 0.12 +0.2 185,185 - LRK53_RS18955 0.12 -0.0 185,185 - LRK53_RS18955 0.12 -2.2 185,185 - LRK53_RS18955 0.12 -0.8 185,185 - LRK53_RS18955 0.12 +0.2 185,285 + LRK53_RS18955 0.28 -0.2 185,285 + LRK53_RS18955 0.28 -1.1 185,285 + LRK53_RS18955 0.28 -0.6 185,285 + LRK53_RS18955 0.28 -1.5 185,285 + LRK53_RS18955 0.28 +0.3 185,286 - LRK53_RS18955 0.28 -1.2 185,286 - LRK53_RS18955 0.28 -0.5 185,286 - LRK53_RS18955 0.28 -1.3 185,286 - LRK53_RS18955 0.28 +0.3 185,286 - LRK53_RS18955 0.28 -1.3 185,286 - LRK53_RS18955 0.28 -0.0 185,286 - LRK53_RS18955 0.28 +0.3 185,286 - LRK53_RS18955 0.28 +1.2 185,286 - LRK53_RS18955 0.28 +0.5 185,286 - LRK53_RS18955 0.28 -2.2 185,286 - LRK53_RS18955 0.28 +0.4 185,340 + LRK53_RS18955 0.36 +0.5 185,341 - LRK53_RS18955 0.36 -2.1 185,353 + LRK53_RS18955 0.38 -1.4 185,404 + LRK53_RS18955 0.46 -1.0 185,404 + LRK53_RS18955 0.46 +0.6 185,404 + LRK53_RS18955 0.46 -0.4 185,404 + LRK53_RS18955 0.46 -0.3 185,405 - LRK53_RS18955 0.46 -0.4 185,405 - LRK53_RS18955 0.46 -1.2 185,405 - LRK53_RS18955 0.46 +1.1 185,405 - LRK53_RS18955 0.46 -0.5 185,405 - LRK53_RS18955 0.46 +1.3 185,405 - LRK53_RS18955 0.46 -0.6 185,580 - LRK53_RS18955 0.74 -0.0 185,743 + +0.5 185,744 - -0.8 185,744 - -0.0 185,811 + +1.0 185,812 - -1.8 185,921 + LRK53_RS18960 0.26 -0.9 186,065 + LRK53_RS18960 0.77 +0.2 186,128 + +0.2 186,128 + +0.1 186,129 - +0.7 186,129 - +1.2 186,193 + +0.5 186,284 + LRK53_RS18965 0.11 +1.4 186,284 + LRK53_RS18965 0.11 -1.3 186,285 - LRK53_RS18965 0.11 -0.5 186,285 - LRK53_RS18965 0.11 -1.2 186,285 - LRK53_RS18965 0.11 +1.2 186,285 - LRK53_RS18965 0.11 +0.1 186,285 - LRK53_RS18965 0.11 +0.3 186,363 + LRK53_RS18965 0.22 +2.0 186,363 + LRK53_RS18965 0.22 +0.8 186,363 + LRK53_RS18965 0.22 -0.4 186,363 + LRK53_RS18965 0.22 -0.4 186,363 + LRK53_RS18965 0.22 -0.8 186,364 - LRK53_RS18965 0.22 -0.2 186,364 - LRK53_RS18965 0.22 -1.9 186,364 - LRK53_RS18965 0.22 -1.1 186,364 - LRK53_RS18965 0.22 +1.4 186,364 - LRK53_RS18965 0.22 +1.4 186,364 - LRK53_RS18965 0.22 -0.2 186,364 - LRK53_RS18965 0.22 +0.2 186,494 + LRK53_RS18965 0.41 +0.1 186,495 - LRK53_RS18965 0.41 -1.0 186,605 + LRK53_RS18965 0.57 -0.7 186,605 + LRK53_RS18965 0.57 -1.0 186,605 + LRK53_RS18965 0.57 -0.4 186,605 + LRK53_RS18965 0.57 +2.2 186,605 + LRK53_RS18965 0.57 -0.7 186,605 + LRK53_RS18965 0.57 -0.8 186,605 + LRK53_RS18965 0.57 -1.1 186,605 + LRK53_RS18965 0.57 -0.7 186,605 + LRK53_RS18965 0.57 -0.2 186,605 + LRK53_RS18965 0.57 +1.3 186,605 + LRK53_RS18965 0.57 +0.2 186,605 + LRK53_RS18965 0.57 -1.0 186,605 + LRK53_RS18965 0.57 -1.4 186,605 + LRK53_RS18965 0.57 -1.6 186,605 + LRK53_RS18965 0.57 +1.7 186,605 + LRK53_RS18965 0.57 +1.1 186,605 + LRK53_RS18965 0.57 -0.7 186,605 + LRK53_RS18965 0.57 -0.2 186,605 + LRK53_RS18965 0.57 -0.2 186,605 + LRK53_RS18965 0.57 -0.8 186,605 + LRK53_RS18965 0.57 -0.3 186,606 - LRK53_RS18965 0.57 -0.8 186,606 - LRK53_RS18965 0.57 +1.4 186,606 - LRK53_RS18965 0.57 -1.2 186,606 - LRK53_RS18965 0.57 -0.8 186,606 - LRK53_RS18965 0.57 -0.0 186,606 - LRK53_RS18965 0.57 +1.0 186,606 - LRK53_RS18965 0.57 -0.7 186,606 - LRK53_RS18965 0.57 -0.5 186,606 - LRK53_RS18965 0.57 +1.4 186,606 - LRK53_RS18965 0.57 -0.7 186,606 - LRK53_RS18965 0.57 -0.5 186,606 - LRK53_RS18965 0.57 -0.8 186,606 - LRK53_RS18965 0.57 -0.5 186,606 - LRK53_RS18965 0.57 +0.5 186,606 - LRK53_RS18965 0.57 -2.2 186,606 - LRK53_RS18965 0.57 +1.2 186,606 - LRK53_RS18965 0.57 -0.2 186,606 - LRK53_RS18965 0.57 -0.9 186,606 - LRK53_RS18965 0.57 -0.1 186,606 - LRK53_RS18965 0.57 +3.0 186,725 + LRK53_RS18965 0.74 +1.8 186,725 + LRK53_RS18965 0.74 -1.2 186,725 + LRK53_RS18965 0.74 -0.9 186,725 + LRK53_RS18965 0.74 -1.3 186,726 - LRK53_RS18965 0.74 -0.5 186,726 - LRK53_RS18965 0.74 -1.0
Or see this region's nucleotide sequence