Experiment: planktonic; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03085 and LRK53_RS03090 are separated by 149 nucleotides LRK53_RS03090 and LRK53_RS03095 are separated by 91 nucleotides
LRK53_RS03085: LRK53_RS03085 - biosynthetic-type acetolactate synthase large subunit, at 719,173 to 721,029
_RS03085
LRK53_RS03090: LRK53_RS03090 - ketol-acid reductoisomerase, at 721,179 to 722,192
_RS03090
LRK53_RS03095: LRK53_RS03095 - dihydroxy-acid dehydratase, at 722,284 to 724,005
_RS03095
Position (kb) 721
722
723 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 720.299 kb on + strand, within LRK53_RS03085 at 720.299 kb on + strand, within LRK53_RS03085 at 720.300 kb on - strand, within LRK53_RS03085 at 720.300 kb on - strand, within LRK53_RS03085 at 720.736 kb on + strand, within LRK53_RS03085 at 720.737 kb on - strand, within LRK53_RS03085 at 720.875 kb on + strand at 720.875 kb on + strand at 720.875 kb on + strand at 720.875 kb on + strand at 720.875 kb on + strand at 720.937 kb on + strand at 720.938 kb on - strand at 720.938 kb on - strand at 720.938 kb on - strand at 720.938 kb on - strand at 721.306 kb on + strand, within LRK53_RS03090 at 721.306 kb on + strand, within LRK53_RS03090 at 721.307 kb on - strand, within LRK53_RS03090 at 721.307 kb on - strand, within LRK53_RS03090 at 721.307 kb on - strand, within LRK53_RS03090 at 721.307 kb on - strand, within LRK53_RS03090 at 721.307 kb on - strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.377 kb on + strand, within LRK53_RS03090 at 721.378 kb on - strand, within LRK53_RS03090 at 721.378 kb on - strand, within LRK53_RS03090 at 721.378 kb on - strand, within LRK53_RS03090 at 721.378 kb on - strand, within LRK53_RS03090 at 721.378 kb on - strand, within LRK53_RS03090 at 721.433 kb on - strand, within LRK53_RS03090 at 721.433 kb on - strand, within LRK53_RS03090 at 721.433 kb on - strand, within LRK53_RS03090 at 721.433 kb on - strand, within LRK53_RS03090 at 721.441 kb on + strand, within LRK53_RS03090 at 721.492 kb on + strand, within LRK53_RS03090 at 721.493 kb on - strand, within LRK53_RS03090 at 721.493 kb on - strand, within LRK53_RS03090 at 721.534 kb on + strand, within LRK53_RS03090 at 721.534 kb on + strand, within LRK53_RS03090 at 721.534 kb on + strand, within LRK53_RS03090 at 721.534 kb on + strand, within LRK53_RS03090 at 721.534 kb on + strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.535 kb on - strand, within LRK53_RS03090 at 721.538 kb on - strand, within LRK53_RS03090 at 721.538 kb on - strand, within LRK53_RS03090 at 721.790 kb on - strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.942 kb on + strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.943 kb on - strand, within LRK53_RS03090 at 721.945 kb on - strand, within LRK53_RS03090 at 721.945 kb on - strand, within LRK53_RS03090 at 722.137 kb on + strand at 722.404 kb on + strand at 722.404 kb on + strand at 722.405 kb on - strand at 722.405 kb on - strand at 722.876 kb on + strand, within LRK53_RS03095 at 722.877 kb on - strand, within LRK53_RS03095 at 722.877 kb on - strand, within LRK53_RS03095 at 722.889 kb on - strand, within LRK53_RS03095 at 723.080 kb on + strand, within LRK53_RS03095
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; remove 720,299 + LRK53_RS03085 0.61 -0.0 720,299 + LRK53_RS03085 0.61 -0.5 720,300 - LRK53_RS03085 0.61 +0.5 720,300 - LRK53_RS03085 0.61 -1.7 720,736 + LRK53_RS03085 0.84 -0.7 720,737 - LRK53_RS03085 0.84 +1.3 720,875 + -1.0 720,875 + +0.2 720,875 + -0.2 720,875 + -0.7 720,875 + -0.6 720,937 + -1.1 720,938 - -0.7 720,938 - -0.6 720,938 - -0.2 720,938 - -0.5 721,306 + LRK53_RS03090 0.13 +0.5 721,306 + LRK53_RS03090 0.13 -0.3 721,307 - LRK53_RS03090 0.13 -0.9 721,307 - LRK53_RS03090 0.13 +2.0 721,307 - LRK53_RS03090 0.13 -0.7 721,307 - LRK53_RS03090 0.13 +1.8 721,307 - LRK53_RS03090 0.13 -1.2 721,377 + LRK53_RS03090 0.20 -3.0 721,377 + LRK53_RS03090 0.20 -0.7 721,377 + LRK53_RS03090 0.20 -2.0 721,377 + LRK53_RS03090 0.20 +0.5 721,377 + LRK53_RS03090 0.20 -2.4 721,377 + LRK53_RS03090 0.20 -0.7 721,378 - LRK53_RS03090 0.20 +0.0 721,378 - LRK53_RS03090 0.20 -0.2 721,378 - LRK53_RS03090 0.20 -0.2 721,378 - LRK53_RS03090 0.20 +1.0 721,378 - LRK53_RS03090 0.20 +0.0 721,433 - LRK53_RS03090 0.25 +0.8 721,433 - LRK53_RS03090 0.25 -1.3 721,433 - LRK53_RS03090 0.25 +1.0 721,433 - LRK53_RS03090 0.25 -2.3 721,441 + LRK53_RS03090 0.26 -1.6 721,492 + LRK53_RS03090 0.31 +0.3 721,493 - LRK53_RS03090 0.31 -0.6 721,493 - LRK53_RS03090 0.31 +0.4 721,534 + LRK53_RS03090 0.35 -0.3 721,534 + LRK53_RS03090 0.35 -1.0 721,534 + LRK53_RS03090 0.35 -1.3 721,534 + LRK53_RS03090 0.35 -1.9 721,534 + LRK53_RS03090 0.35 +0.0 721,535 - LRK53_RS03090 0.35 -0.6 721,535 - LRK53_RS03090 0.35 +0.8 721,535 - LRK53_RS03090 0.35 +1.0 721,535 - LRK53_RS03090 0.35 -2.0 721,535 - LRK53_RS03090 0.35 +0.0 721,535 - LRK53_RS03090 0.35 -1.9 721,538 - LRK53_RS03090 0.35 -0.7 721,538 - LRK53_RS03090 0.35 -0.5 721,790 - LRK53_RS03090 0.60 -0.1 721,942 + LRK53_RS03090 0.75 -0.5 721,942 + LRK53_RS03090 0.75 -1.6 721,942 + LRK53_RS03090 0.75 -1.3 721,942 + LRK53_RS03090 0.75 +0.4 721,942 + LRK53_RS03090 0.75 -0.7 721,942 + LRK53_RS03090 0.75 -1.4 721,942 + LRK53_RS03090 0.75 +0.0 721,942 + LRK53_RS03090 0.75 -1.0 721,942 + LRK53_RS03090 0.75 -2.9 721,942 + LRK53_RS03090 0.75 -0.2 721,942 + LRK53_RS03090 0.75 -1.0 721,942 + LRK53_RS03090 0.75 -1.8 721,942 + LRK53_RS03090 0.75 +0.1 721,942 + LRK53_RS03090 0.75 -1.3 721,942 + LRK53_RS03090 0.75 -1.8 721,943 - LRK53_RS03090 0.75 -1.4 721,943 - LRK53_RS03090 0.75 -2.4 721,943 - LRK53_RS03090 0.75 -0.7 721,943 - LRK53_RS03090 0.75 +0.8 721,943 - LRK53_RS03090 0.75 -0.2 721,943 - LRK53_RS03090 0.75 +0.8 721,943 - LRK53_RS03090 0.75 -0.7 721,943 - LRK53_RS03090 0.75 -1.6 721,943 - LRK53_RS03090 0.75 -1.7 721,943 - LRK53_RS03090 0.75 -1.4 721,943 - LRK53_RS03090 0.75 -1.3 721,943 - LRK53_RS03090 0.75 -1.3 721,943 - LRK53_RS03090 0.75 -0.9 721,943 - LRK53_RS03090 0.75 +0.6 721,945 - LRK53_RS03090 0.76 -1.3 721,945 - LRK53_RS03090 0.76 -1.3 722,137 + -0.9 722,404 + -1.7 722,404 + -0.9 722,405 - -1.8 722,405 - -0.9 722,876 + LRK53_RS03095 0.34 +0.2 722,877 - LRK53_RS03095 0.34 -1.4 722,877 - LRK53_RS03095 0.34 +0.3 722,889 - LRK53_RS03095 0.35 +0.0 723,080 + LRK53_RS03095 0.46 -1.0
Or see this region's nucleotide sequence