Experiment: planktonic; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02350 and LRK53_RS02355 overlap by 1 nucleotides LRK53_RS02355 and LRK53_RS02360 are separated by 235 nucleotides LRK53_RS02360 and LRK53_RS02365 are separated by 226 nucleotides
LRK53_RS02350: LRK53_RS02350 - hypothetical protein, at 540,903 to 541,922
_RS02350
LRK53_RS02355: LRK53_RS02355 - diphosphomevalonate decarboxylase, at 541,922 to 542,914
_RS02355
LRK53_RS02360: LRK53_RS02360 - GNAT family N-acetyltransferase, at 543,150 to 543,596
_RS02360
LRK53_RS02365: LRK53_RS02365 - RimK family protein, at 543,823 to 545,310
_RS02365
Position (kb) 541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.939 kb on + strand at 540.940 kb on - strand at 540.940 kb on - strand at 541.054 kb on + strand, within LRK53_RS02350 at 541.054 kb on + strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.055 kb on - strand, within LRK53_RS02350 at 541.394 kb on - strand, within LRK53_RS02350 at 541.786 kb on + strand, within LRK53_RS02350 at 541.873 kb on + strand at 541.873 kb on + strand at 541.874 kb on - strand at 542.154 kb on + strand, within LRK53_RS02355 at 542.155 kb on - strand, within LRK53_RS02355 at 542.155 kb on - strand, within LRK53_RS02355 at 542.155 kb on - strand, within LRK53_RS02355 at 542.304 kb on + strand, within LRK53_RS02355 at 542.304 kb on + strand, within LRK53_RS02355 at 542.305 kb on - strand, within LRK53_RS02355 at 542.868 kb on + strand at 542.868 kb on + strand at 542.868 kb on + strand at 542.868 kb on + strand at 542.868 kb on + strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 542.869 kb on - strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.106 kb on + strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.107 kb on - strand at 543.120 kb on + strand at 543.120 kb on + strand at 543.120 kb on + strand at 543.120 kb on + strand at 543.121 kb on - strand at 543.121 kb on - strand at 543.121 kb on - strand at 543.121 kb on - strand at 543.670 kb on + strand at 543.670 kb on + strand at 543.670 kb on + strand at 543.670 kb on + strand at 543.671 kb on - strand at 543.805 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.871 kb on + strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.874 kb on + strand at 543.874 kb on + strand at 543.875 kb on - strand at 543.875 kb on - strand at 543.907 kb on + strand at 543.907 kb on + strand at 543.907 kb on + strand at 543.907 kb on + strand at 543.907 kb on + strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand at 543.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; remove 540,939 + -1.4 540,940 - -2.0 540,940 - -0.8 541,054 + LRK53_RS02350 0.15 +0.5 541,054 + LRK53_RS02350 0.15 +1.0 541,055 - LRK53_RS02350 0.15 -1.1 541,055 - LRK53_RS02350 0.15 +0.1 541,055 - LRK53_RS02350 0.15 +1.1 541,055 - LRK53_RS02350 0.15 -1.1 541,055 - LRK53_RS02350 0.15 -1.2 541,055 - LRK53_RS02350 0.15 -1.5 541,055 - LRK53_RS02350 0.15 -0.6 541,394 - LRK53_RS02350 0.48 -1.8 541,786 + LRK53_RS02350 0.87 -1.7 541,873 + -0.7 541,873 + +0.6 541,874 - -1.5 542,154 + LRK53_RS02355 0.23 -0.6 542,155 - LRK53_RS02355 0.23 -0.2 542,155 - LRK53_RS02355 0.23 -1.3 542,155 - LRK53_RS02355 0.23 -1.2 542,304 + LRK53_RS02355 0.38 -0.7 542,304 + LRK53_RS02355 0.38 -0.5 542,305 - LRK53_RS02355 0.39 -1.1 542,868 + -0.7 542,868 + -0.0 542,868 + +0.3 542,868 + -1.3 542,868 + -0.8 542,869 - -1.1 542,869 - -1.3 542,869 - -1.6 542,869 - -0.0 542,869 - -0.8 542,869 - +0.4 542,869 - -1.0 542,869 - -0.2 542,869 - +0.1 543,106 + -1.2 543,106 + -0.1 543,106 + -1.1 543,106 + -0.3 543,106 + -1.4 543,106 + -0.7 543,106 + -0.9 543,106 + -0.9 543,106 + +0.5 543,106 + -0.2 543,106 + -0.5 543,106 + -0.9 543,106 + -2.2 543,106 + -2.1 543,106 + -0.7 543,106 + -2.2 543,106 + -1.2 543,106 + -1.7 543,106 + -1.1 543,106 + -1.6 543,106 + -2.5 543,106 + +1.9 543,106 + -0.6 543,106 + +0.2 543,106 + +1.4 543,106 + -0.8 543,106 + -0.7 543,106 + -1.6 543,106 + -1.5 543,106 + -0.4 543,106 + -2.4 543,106 + -2.6 543,106 + -0.2 543,106 + -0.4 543,106 + -1.5 543,106 + -1.0 543,106 + +0.3 543,106 + -0.7 543,106 + -0.2 543,106 + -2.2 543,106 + -0.2 543,106 + -0.9 543,106 + +1.2 543,106 + -0.4 543,106 + -2.0 543,106 + -1.2 543,106 + -0.4 543,107 - +0.9 543,107 - +0.2 543,107 - -0.4 543,107 - -0.9 543,107 - -0.0 543,107 - -2.3 543,107 - -1.2 543,107 - -0.7 543,107 - -2.5 543,107 - +0.6 543,107 - -0.0 543,107 - -1.2 543,107 - -2.3 543,107 - -1.9 543,107 - -2.2 543,107 - -0.5 543,107 - -0.1 543,107 - +1.5 543,107 - +0.9 543,107 - -1.3 543,107 - +0.2 543,107 - -1.4 543,107 - -0.2 543,107 - +0.4 543,107 - +1.5 543,107 - -1.8 543,107 - -1.4 543,107 - -1.4 543,107 - -1.3 543,107 - -0.5 543,107 - -0.7 543,107 - +0.8 543,107 - -1.1 543,107 - +1.1 543,107 - -0.9 543,107 - -1.7 543,107 - -0.1 543,107 - -1.9 543,107 - -2.1 543,107 - -0.7 543,107 - +0.2 543,107 - -0.9 543,107 - -0.5 543,107 - -1.5 543,120 + -0.0 543,120 + -0.8 543,120 + -1.0 543,120 + -2.0 543,121 - -0.1 543,121 - -0.4 543,121 - +1.8 543,121 - -0.6 543,670 + -0.5 543,670 + -0.0 543,670 + -0.2 543,670 + -0.5 543,671 - -1.1 543,805 + -1.3 543,871 + -0.0 543,871 + -0.4 543,871 + -1.7 543,871 + -1.3 543,871 + +0.7 543,871 + +0.4 543,871 + -0.6 543,871 + -2.3 543,871 + -1.4 543,871 + -0.8 543,871 + -0.7 543,871 + -2.0 543,871 + +0.7 543,871 + -0.7 543,872 - +0.2 543,872 - +0.5 543,872 - -0.9 543,872 - -0.3 543,872 - -2.1 543,872 - -0.9 543,872 - -1.6 543,874 + -2.2 543,874 + -0.5 543,875 - -0.4 543,875 - +0.3 543,907 + +0.6 543,907 + +0.5 543,907 + +1.6 543,907 + -0.7 543,907 + -1.2 543,908 - -0.8 543,908 - -1.8 543,908 - -1.5 543,908 - +1.3 543,908 - +0.8 543,908 - -1.3 543,908 - -0.3 543,908 - -0.4
Or see this region's nucleotide sequence