Experiment: planktonic; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02285 and LRK53_RS02290 are separated by 160 nucleotides LRK53_RS02290 and LRK53_RS02295 are separated by 0 nucleotides
LRK53_RS02285: LRK53_RS02285 - oxygen-dependent coproporphyrinogen oxidase, at 528,165 to 529,067
_RS02285
LRK53_RS02290: LRK53_RS02290 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 529,228 to 530,571
_RS02290
LRK53_RS02295: LRK53_RS02295 - ribokinase, at 530,572 to 531,468
_RS02295
Position (kb) 529
530
531 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 528.589 kb on + strand, within LRK53_RS02285 at 528.589 kb on + strand, within LRK53_RS02285 at 528.675 kb on + strand, within LRK53_RS02285 at 528.676 kb on - strand, within LRK53_RS02285 at 528.681 kb on + strand, within LRK53_RS02285 at 528.682 kb on - strand, within LRK53_RS02285 at 528.682 kb on - strand, within LRK53_RS02285 at 528.682 kb on - strand, within LRK53_RS02285 at 528.726 kb on + strand, within LRK53_RS02285 at 528.726 kb on + strand, within LRK53_RS02285 at 528.726 kb on + strand, within LRK53_RS02285 at 528.804 kb on + strand, within LRK53_RS02285 at 528.805 kb on - strand, within LRK53_RS02285 at 528.840 kb on + strand, within LRK53_RS02285 at 528.870 kb on + strand, within LRK53_RS02285 at 528.886 kb on - strand, within LRK53_RS02285 at 528.907 kb on - strand, within LRK53_RS02285 at 529.035 kb on - strand at 529.041 kb on + strand at 529.041 kb on + strand at 529.042 kb on - strand at 529.042 kb on - strand at 529.042 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.066 kb on - strand at 529.185 kb on + strand at 529.185 kb on + strand at 529.185 kb on + strand at 529.185 kb on + strand at 529.447 kb on + strand, within LRK53_RS02290 at 529.447 kb on + strand, within LRK53_RS02290 at 529.447 kb on + strand, within LRK53_RS02290 at 529.447 kb on + strand, within LRK53_RS02290 at 529.447 kb on + strand, within LRK53_RS02290 at 529.448 kb on - strand, within LRK53_RS02290 at 529.448 kb on - strand, within LRK53_RS02290 at 529.448 kb on - strand, within LRK53_RS02290 at 529.448 kb on - strand, within LRK53_RS02290 at 529.734 kb on + strand, within LRK53_RS02290 at 529.735 kb on - strand, within LRK53_RS02290 at 529.859 kb on + strand, within LRK53_RS02290 at 529.977 kb on + strand, within LRK53_RS02290 at 530.515 kb on + strand at 530.516 kb on - strand at 530.516 kb on - strand at 530.676 kb on + strand, within LRK53_RS02295 at 530.676 kb on + strand, within LRK53_RS02295 at 530.677 kb on - strand, within LRK53_RS02295 at 530.677 kb on - strand, within LRK53_RS02295 at 530.836 kb on + strand, within LRK53_RS02295 at 530.837 kb on - strand, within LRK53_RS02295 at 530.837 kb on - strand, within LRK53_RS02295 at 530.837 kb on - strand, within LRK53_RS02295 at 530.933 kb on + strand, within LRK53_RS02295 at 530.933 kb on + strand, within LRK53_RS02295 at 530.933 kb on + strand, within LRK53_RS02295 at 530.933 kb on + strand, within LRK53_RS02295 at 530.934 kb on - strand, within LRK53_RS02295 at 530.934 kb on - strand, within LRK53_RS02295 at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.435 kb on + strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.436 kb on - strand at 531.511 kb on - strand at 531.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; remove 528,589 + LRK53_RS02285 0.47 -0.6 528,589 + LRK53_RS02285 0.47 +1.5 528,675 + LRK53_RS02285 0.56 +0.2 528,676 - LRK53_RS02285 0.57 -0.1 528,681 + LRK53_RS02285 0.57 -1.2 528,682 - LRK53_RS02285 0.57 -2.5 528,682 - LRK53_RS02285 0.57 +1.3 528,682 - LRK53_RS02285 0.57 +0.2 528,726 + LRK53_RS02285 0.62 +0.3 528,726 + LRK53_RS02285 0.62 -0.4 528,726 + LRK53_RS02285 0.62 -0.1 528,804 + LRK53_RS02285 0.71 -0.9 528,805 - LRK53_RS02285 0.71 +0.8 528,840 + LRK53_RS02285 0.75 -0.1 528,870 + LRK53_RS02285 0.78 -0.1 528,886 - LRK53_RS02285 0.80 +1.5 528,907 - LRK53_RS02285 0.82 -0.2 529,035 - +0.1 529,041 + -2.1 529,041 + -0.9 529,042 - -0.7 529,042 - -0.6 529,042 - -0.6 529,066 - -1.2 529,066 - -0.1 529,066 - -1.2 529,066 - -0.1 529,066 - -4.1 529,066 - -1.2 529,185 + -1.1 529,185 + -1.4 529,185 + -0.7 529,185 + +0.4 529,447 + LRK53_RS02290 0.16 -1.2 529,447 + LRK53_RS02290 0.16 -0.7 529,447 + LRK53_RS02290 0.16 +0.1 529,447 + LRK53_RS02290 0.16 -0.7 529,447 + LRK53_RS02290 0.16 +0.2 529,448 - LRK53_RS02290 0.16 +0.9 529,448 - LRK53_RS02290 0.16 +2.0 529,448 - LRK53_RS02290 0.16 +1.2 529,448 - LRK53_RS02290 0.16 -1.1 529,734 + LRK53_RS02290 0.38 -0.2 529,735 - LRK53_RS02290 0.38 -0.8 529,859 + LRK53_RS02290 0.47 +0.5 529,977 + LRK53_RS02290 0.56 -0.4 530,515 + -1.7 530,516 - -0.8 530,516 - -0.2 530,676 + LRK53_RS02295 0.12 -2.0 530,676 + LRK53_RS02295 0.12 -1.0 530,677 - LRK53_RS02295 0.12 -0.2 530,677 - LRK53_RS02295 0.12 -1.3 530,836 + LRK53_RS02295 0.29 +0.1 530,837 - LRK53_RS02295 0.30 -0.4 530,837 - LRK53_RS02295 0.30 -2.1 530,837 - LRK53_RS02295 0.30 -0.9 530,933 + LRK53_RS02295 0.40 -0.5 530,933 + LRK53_RS02295 0.40 +0.3 530,933 + LRK53_RS02295 0.40 -1.1 530,933 + LRK53_RS02295 0.40 +1.1 530,934 - LRK53_RS02295 0.40 -1.5 530,934 - LRK53_RS02295 0.40 -1.9 531,435 + -0.1 531,435 + -1.6 531,435 + +1.5 531,435 + +0.8 531,435 + -0.2 531,435 + -1.2 531,435 + -1.1 531,436 - -2.5 531,436 - +0.2 531,436 - -0.4 531,436 - -1.8 531,436 - -1.3 531,436 - -1.2 531,436 - -1.5 531,436 - +0.3 531,436 - -0.6 531,436 - +1.8 531,436 - -1.3 531,511 - -1.1 531,511 - -1.9
Or see this region's nucleotide sequence