Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00920

Experiment: planktonic; Day1; NLDM;

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS00910 and LRK53_RS00915 overlap by 1 nucleotidesLRK53_RS00915 and LRK53_RS00920 overlap by 4 nucleotidesLRK53_RS00920 and LRK53_RS00925 overlap by 4 nucleotidesLRK53_RS00925 and LRK53_RS00930 overlap by 4 nucleotidesLRK53_RS00930 and LRK53_RS00935 overlap by 4 nucleotides LRK53_RS00910: LRK53_RS00910 - monovalent cation/H+ antiporter subunit A, at 230,272 to 233,166 _RS00910 LRK53_RS00915: LRK53_RS00915 - Na+/H+ antiporter subunit C, at 233,166 to 233,507 _RS00915 LRK53_RS00920: LRK53_RS00920 - monovalent cation/H+ antiporter subunit D, at 233,504 to 235,099 _RS00920 LRK53_RS00925: LRK53_RS00925 - Na+/H+ antiporter subunit E, at 235,096 to 235,584 _RS00925 LRK53_RS00930: LRK53_RS00930 - K+/H+ antiporter subunit F, at 235,581 to 235,862 _RS00930 LRK53_RS00935: LRK53_RS00935 - monovalent cation/H(+) antiporter subunit G, at 235,859 to 236,212 _RS00935 Position (kb) 233 234 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 232.751 kb on + strand, within LRK53_RS00910at 232.752 kb on - strand, within LRK53_RS00910at 232.752 kb on - strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.852 kb on + strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 232.853 kb on - strand, within LRK53_RS00910at 233.197 kb on + strandat 233.198 kb on - strandat 233.198 kb on - strandat 233.198 kb on - strandat 233.274 kb on + strand, within LRK53_RS00915at 233.275 kb on - strand, within LRK53_RS00915at 233.364 kb on + strand, within LRK53_RS00915at 233.687 kb on + strand, within LRK53_RS00920at 233.937 kb on - strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.990 kb on + strand, within LRK53_RS00920at 233.991 kb on - strand, within LRK53_RS00920at 233.991 kb on - strand, within LRK53_RS00920at 233.991 kb on - strand, within LRK53_RS00920at 234.209 kb on + strand, within LRK53_RS00920at 234.209 kb on + strand, within LRK53_RS00920at 234.209 kb on + strand, within LRK53_RS00920at 234.209 kb on + strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.210 kb on - strand, within LRK53_RS00920at 234.269 kb on + strand, within LRK53_RS00920at 234.269 kb on + strand, within LRK53_RS00920at 234.269 kb on + strand, within LRK53_RS00920at 234.269 kb on + strand, within LRK53_RS00920at 234.269 kb on + strand, within LRK53_RS00920at 234.269 kb on + strand, within LRK53_RS00920at 234.269 kb on + strand, within LRK53_RS00920at 234.270 kb on - strand, within LRK53_RS00920at 234.270 kb on - strand, within LRK53_RS00920at 234.270 kb on - strand, within LRK53_RS00920at 234.509 kb on + strand, within LRK53_RS00920at 234.509 kb on + strand, within LRK53_RS00920at 234.510 kb on - strand, within LRK53_RS00920at 234.510 kb on - strand, within LRK53_RS00920at 234.510 kb on - strand, within LRK53_RS00920at 234.510 kb on - strand, within LRK53_RS00920at 234.510 kb on - strand, within LRK53_RS00920at 234.614 kb on + strand, within LRK53_RS00920at 234.615 kb on - strand, within LRK53_RS00920at 234.615 kb on - strand, within LRK53_RS00920at 234.615 kb on - strand, within LRK53_RS00920at 234.615 kb on - strand, within LRK53_RS00920at 234.654 kb on - strand, within LRK53_RS00920at 234.933 kb on + strand, within LRK53_RS00920at 234.933 kb on + strand, within LRK53_RS00920at 234.933 kb on + strand, within LRK53_RS00920at 234.933 kb on + strand, within LRK53_RS00920at 234.933 kb on + strand, within LRK53_RS00920at 234.933 kb on + strand, within LRK53_RS00920at 234.933 kb on + strand, within LRK53_RS00920at 234.934 kb on - strand, within LRK53_RS00920at 234.934 kb on - strand, within LRK53_RS00920at 234.934 kb on - strand, within LRK53_RS00920at 234.934 kb on - strand, within LRK53_RS00920at 234.934 kb on - strand, within LRK53_RS00920at 235.058 kb on + strandat 235.058 kb on + strandat 235.058 kb on + strandat 235.058 kb on + strandat 235.059 kb on - strandat 235.059 kb on - strandat 235.267 kb on + strand, within LRK53_RS00925at 235.268 kb on - strand, within LRK53_RS00925at 235.408 kb on + strand, within LRK53_RS00925at 235.468 kb on + strand, within LRK53_RS00925at 235.468 kb on + strand, within LRK53_RS00925at 235.468 kb on + strand, within LRK53_RS00925at 235.469 kb on - strand, within LRK53_RS00925at 235.469 kb on - strand, within LRK53_RS00925at 235.469 kb on - strand, within LRK53_RS00925at 235.502 kb on + strand, within LRK53_RS00925at 235.502 kb on + strand, within LRK53_RS00925at 235.502 kb on + strand, within LRK53_RS00925at 235.502 kb on + strand, within LRK53_RS00925at 235.502 kb on + strand, within LRK53_RS00925at 235.502 kb on + strand, within LRK53_RS00925at 235.502 kb on + strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.503 kb on - strand, within LRK53_RS00925at 235.553 kb on - strandat 235.713 kb on + strand, within LRK53_RS00930at 235.713 kb on + strand, within LRK53_RS00930at 235.713 kb on + strand, within LRK53_RS00930at 235.713 kb on + strand, within LRK53_RS00930at 235.713 kb on + strand, within LRK53_RS00930at 235.714 kb on - strand, within LRK53_RS00930at 235.714 kb on - strand, within LRK53_RS00930at 235.714 kb on - strand, within LRK53_RS00930at 235.770 kb on + strand, within LRK53_RS00930at 235.770 kb on + strand, within LRK53_RS00930at 235.770 kb on + strand, within LRK53_RS00930at 235.771 kb on - strand, within LRK53_RS00930at 235.771 kb on - strand, within LRK53_RS00930at 235.771 kb on - strand, within LRK53_RS00930at 235.771 kb on - strand, within LRK53_RS00930at 235.909 kb on - strand, within LRK53_RS00935at 235.917 kb on + strand, within LRK53_RS00935at 235.917 kb on + strand, within LRK53_RS00935at 235.917 kb on + strand, within LRK53_RS00935at 235.918 kb on - strand, within LRK53_RS00935at 235.918 kb on - strand, within LRK53_RS00935at 235.976 kb on + strand, within LRK53_RS00935at 235.976 kb on + strand, within LRK53_RS00935at 235.977 kb on - strand, within LRK53_RS00935at 236.082 kb on - strand, within LRK53_RS00935at 236.082 kb on - strand, within LRK53_RS00935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM;
remove
232,751 + LRK53_RS00910 0.86 +0.6
232,752 - LRK53_RS00910 0.86 +0.9
232,752 - LRK53_RS00910 0.86 -0.0
232,852 + LRK53_RS00910 0.89 -0.5
232,852 + LRK53_RS00910 0.89 -1.1
232,852 + LRK53_RS00910 0.89 -0.2
232,852 + LRK53_RS00910 0.89 -0.6
232,852 + LRK53_RS00910 0.89 -0.8
232,852 + LRK53_RS00910 0.89 -0.5
232,852 + LRK53_RS00910 0.89 +0.1
232,852 + LRK53_RS00910 0.89 -1.8
232,853 - LRK53_RS00910 0.89 +0.1
232,853 - LRK53_RS00910 0.89 -1.2
232,853 - LRK53_RS00910 0.89 -0.5
232,853 - LRK53_RS00910 0.89 -0.3
232,853 - LRK53_RS00910 0.89 -0.0
232,853 - LRK53_RS00910 0.89 -0.3
232,853 - LRK53_RS00910 0.89 +1.4
232,853 - LRK53_RS00910 0.89 -0.5
232,853 - LRK53_RS00910 0.89 +0.3
233,197 + -0.5
233,198 - -1.5
233,198 - +0.6
233,198 - -0.7
233,274 + LRK53_RS00915 0.32 +0.6
233,275 - LRK53_RS00915 0.32 -1.6
233,364 + LRK53_RS00915 0.58 +0.6
233,687 + LRK53_RS00920 0.11 -0.5
233,937 - LRK53_RS00920 0.27 +0.6
233,990 + LRK53_RS00920 0.30 +0.3
233,990 + LRK53_RS00920 0.30 -1.0
233,990 + LRK53_RS00920 0.30 -2.0
233,990 + LRK53_RS00920 0.30 +0.7
233,990 + LRK53_RS00920 0.30 -0.8
233,990 + LRK53_RS00920 0.30 +1.2
233,990 + LRK53_RS00920 0.30 -2.4
233,990 + LRK53_RS00920 0.30 -0.4
233,991 - LRK53_RS00920 0.31 +0.9
233,991 - LRK53_RS00920 0.31 -0.4
233,991 - LRK53_RS00920 0.31 -1.8
234,209 + LRK53_RS00920 0.44 +0.5
234,209 + LRK53_RS00920 0.44 -0.2
234,209 + LRK53_RS00920 0.44 -1.0
234,209 + LRK53_RS00920 0.44 -1.0
234,210 - LRK53_RS00920 0.44 -1.8
234,210 - LRK53_RS00920 0.44 -0.5
234,210 - LRK53_RS00920 0.44 -1.2
234,210 - LRK53_RS00920 0.44 +0.5
234,210 - LRK53_RS00920 0.44 +0.4
234,210 - LRK53_RS00920 0.44 +2.0
234,269 + LRK53_RS00920 0.48 +0.1
234,269 + LRK53_RS00920 0.48 -0.9
234,269 + LRK53_RS00920 0.48 +0.5
234,269 + LRK53_RS00920 0.48 +1.7
234,269 + LRK53_RS00920 0.48 -1.3
234,269 + LRK53_RS00920 0.48 -2.0
234,269 + LRK53_RS00920 0.48 +2.1
234,270 - LRK53_RS00920 0.48 -0.4
234,270 - LRK53_RS00920 0.48 +0.7
234,270 - LRK53_RS00920 0.48 +1.7
234,509 + LRK53_RS00920 0.63 +0.3
234,509 + LRK53_RS00920 0.63 -2.8
234,510 - LRK53_RS00920 0.63 -0.3
234,510 - LRK53_RS00920 0.63 +1.3
234,510 - LRK53_RS00920 0.63 -1.2
234,510 - LRK53_RS00920 0.63 -2.3
234,510 - LRK53_RS00920 0.63 +0.7
234,614 + LRK53_RS00920 0.70 -0.1
234,615 - LRK53_RS00920 0.70 -0.4
234,615 - LRK53_RS00920 0.70 -0.8
234,615 - LRK53_RS00920 0.70 -0.4
234,615 - LRK53_RS00920 0.70 -1.3
234,654 - LRK53_RS00920 0.72 -1.0
234,933 + LRK53_RS00920 0.90 +1.8
234,933 + LRK53_RS00920 0.90 -0.1
234,933 + LRK53_RS00920 0.90 +1.6
234,933 + LRK53_RS00920 0.90 +1.0
234,933 + LRK53_RS00920 0.90 -0.3
234,933 + LRK53_RS00920 0.90 -1.1
234,933 + LRK53_RS00920 0.90 +1.2
234,934 - LRK53_RS00920 0.90 +0.2
234,934 - LRK53_RS00920 0.90 -1.3
234,934 - LRK53_RS00920 0.90 +1.3
234,934 - LRK53_RS00920 0.90 -1.1
234,934 - LRK53_RS00920 0.90 +0.2
235,058 + +0.1
235,058 + -1.9
235,058 + -0.8
235,058 + -1.2
235,059 - -1.0
235,059 - -2.1
235,267 + LRK53_RS00925 0.35 -0.9
235,268 - LRK53_RS00925 0.35 +2.1
235,408 + LRK53_RS00925 0.64 -3.0
235,468 + LRK53_RS00925 0.76 -0.9
235,468 + LRK53_RS00925 0.76 -1.6
235,468 + LRK53_RS00925 0.76 +0.2
235,469 - LRK53_RS00925 0.76 +0.3
235,469 - LRK53_RS00925 0.76 -1.6
235,469 - LRK53_RS00925 0.76 +1.5
235,502 + LRK53_RS00925 0.83 -1.5
235,502 + LRK53_RS00925 0.83 +0.3
235,502 + LRK53_RS00925 0.83 -0.9
235,502 + LRK53_RS00925 0.83 -0.3
235,502 + LRK53_RS00925 0.83 -0.7
235,502 + LRK53_RS00925 0.83 +1.5
235,502 + LRK53_RS00925 0.83 -0.4
235,503 - LRK53_RS00925 0.83 -0.7
235,503 - LRK53_RS00925 0.83 -0.1
235,503 - LRK53_RS00925 0.83 -1.5
235,503 - LRK53_RS00925 0.83 +0.7
235,503 - LRK53_RS00925 0.83 +1.3
235,503 - LRK53_RS00925 0.83 -2.0
235,503 - LRK53_RS00925 0.83 -1.2
235,503 - LRK53_RS00925 0.83 +0.6
235,503 - LRK53_RS00925 0.83 -0.7
235,503 - LRK53_RS00925 0.83 -0.7
235,503 - LRK53_RS00925 0.83 +0.6
235,503 - LRK53_RS00925 0.83 -0.6
235,503 - LRK53_RS00925 0.83 +0.2
235,553 - -0.8
235,713 + LRK53_RS00930 0.47 +0.1
235,713 + LRK53_RS00930 0.47 +1.2
235,713 + LRK53_RS00930 0.47 -1.0
235,713 + LRK53_RS00930 0.47 +1.2
235,713 + LRK53_RS00930 0.47 -1.0
235,714 - LRK53_RS00930 0.47 -1.3
235,714 - LRK53_RS00930 0.47 -0.7
235,714 - LRK53_RS00930 0.47 +0.9
235,770 + LRK53_RS00930 0.67 -1.2
235,770 + LRK53_RS00930 0.67 +0.9
235,770 + LRK53_RS00930 0.67 +1.0
235,771 - LRK53_RS00930 0.67 -0.1
235,771 - LRK53_RS00930 0.67 +0.4
235,771 - LRK53_RS00930 0.67 -1.8
235,771 - LRK53_RS00930 0.67 -1.2
235,909 - LRK53_RS00935 0.14 -0.5
235,917 + LRK53_RS00935 0.16 -0.4
235,917 + LRK53_RS00935 0.16 +0.3
235,917 + LRK53_RS00935 0.16 +0.5
235,918 - LRK53_RS00935 0.17 +0.5
235,918 - LRK53_RS00935 0.17 -0.4
235,976 + LRK53_RS00935 0.33 -0.5
235,976 + LRK53_RS00935 0.33 -1.7
235,977 - LRK53_RS00935 0.33 -1.2
236,082 - LRK53_RS00935 0.63 +0.9
236,082 - LRK53_RS00935 0.63 -1.4

Or see this region's nucleotide sequence