Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44385

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS44380 and QEN71_RS44385 are separated by 253 nucleotidesQEN71_RS44385 and QEN71_RS44390 are separated by 139 nucleotides QEN71_RS44380: QEN71_RS44380 - IS3 family transposase, at 350,107 to 350,828 _RS44380 QEN71_RS44385: QEN71_RS44385 - integrase, at 351,082 to 351,165 _RS44385 QEN71_RS44390: QEN71_RS44390 - site-specific integrase, at 351,305 to 352,315 _RS44390 Position (kb) 351 352Strain fitness (log2 ratio) -2 -1 0 1 2at 350.931 kb on - strandat 351.038 kb on + strandat 351.038 kb on + strandat 351.053 kb on + strandat 351.053 kb on + strandat 351.054 kb on - strandat 351.063 kb on + strandat 351.064 kb on - strandat 351.153 kb on + strand, within QEN71_RS44385at 351.163 kb on + strandat 351.166 kb on + strandat 351.230 kb on + strandat 351.240 kb on - strandat 351.240 kb on - strandat 351.244 kb on - strandat 351.429 kb on + strand, within QEN71_RS44390at 351.429 kb on + strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.542 kb on + strand, within QEN71_RS44390at 351.588 kb on + strand, within QEN71_RS44390at 351.588 kb on + strand, within QEN71_RS44390at 351.588 kb on + strand, within QEN71_RS44390at 351.589 kb on - strand, within QEN71_RS44390at 351.746 kb on + strand, within QEN71_RS44390at 351.747 kb on - strand, within QEN71_RS44390at 351.788 kb on - strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.850 kb on - strand, within QEN71_RS44390at 351.854 kb on + strand, within QEN71_RS44390at 351.854 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.898 kb on - strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 352.016 kb on + strand, within QEN71_RS44390at 352.028 kb on + strand, within QEN71_RS44390at 352.029 kb on - strand, within QEN71_RS44390at 352.134 kb on - strand, within QEN71_RS44390

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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350,931 - -0.0
351,038 + -0.4
351,038 + +0.8
351,053 + +1.3
351,053 + +1.1
351,054 - -0.0
351,063 + -0.1
351,064 - -1.2
351,153 + QEN71_RS44385 0.85 +0.8
351,163 + -0.2
351,166 + +0.4
351,230 + +0.5
351,240 - -1.5
351,240 - +0.7
351,244 - -0.2
351,429 + QEN71_RS44390 0.12 -0.3
351,429 + QEN71_RS44390 0.12 +0.1
351,430 - QEN71_RS44390 0.12 -1.3
351,430 - QEN71_RS44390 0.12 +1.2
351,430 - QEN71_RS44390 0.12 -0.6
351,430 - QEN71_RS44390 0.12 +2.1
351,430 - QEN71_RS44390 0.12 +1.1
351,542 + QEN71_RS44390 0.23 -0.4
351,588 + QEN71_RS44390 0.28 +0.7
351,588 + QEN71_RS44390 0.28 +0.1
351,588 + QEN71_RS44390 0.28 +0.7
351,589 - QEN71_RS44390 0.28 +0.6
351,746 + QEN71_RS44390 0.44 +0.3
351,747 - QEN71_RS44390 0.44 -0.7
351,788 - QEN71_RS44390 0.48 -1.0
351,849 + QEN71_RS44390 0.54 -1.5
351,849 + QEN71_RS44390 0.54 -2.0
351,849 + QEN71_RS44390 0.54 -0.5
351,849 + QEN71_RS44390 0.54 -0.7
351,849 + QEN71_RS44390 0.54 -0.1
351,850 - QEN71_RS44390 0.54 +0.3
351,854 + QEN71_RS44390 0.54 +0.4
351,854 + QEN71_RS44390 0.54 +0.4
351,892 + QEN71_RS44390 0.58 -0.8
351,892 + QEN71_RS44390 0.58 +1.3
351,892 + QEN71_RS44390 0.58 -1.7
351,892 + QEN71_RS44390 0.58 +0.6
351,896 + QEN71_RS44390 0.58 -0.5
351,896 + QEN71_RS44390 0.58 -0.2
351,896 + QEN71_RS44390 0.58 +1.5
351,896 + QEN71_RS44390 0.58 -0.7
351,897 - QEN71_RS44390 0.59 +0.4
351,897 - QEN71_RS44390 0.59 -2.2
351,897 - QEN71_RS44390 0.59 -0.5
351,897 - QEN71_RS44390 0.59 +0.7
351,897 - QEN71_RS44390 0.59 +1.0
351,897 - QEN71_RS44390 0.59 -1.0
351,898 - QEN71_RS44390 0.59 -1.3
351,927 + QEN71_RS44390 0.62 -0.5
351,927 + QEN71_RS44390 0.62 -1.4
351,927 + QEN71_RS44390 0.62 -0.1
351,927 + QEN71_RS44390 0.62 +0.3
352,016 + QEN71_RS44390 0.70 -0.7
352,028 + QEN71_RS44390 0.72 -2.0
352,029 - QEN71_RS44390 0.72 +0.2
352,134 - QEN71_RS44390 0.82 -0.7

Or see this region's nucleotide sequence