Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42770 and QEN71_RS42775 are separated by 8 nucleotides QEN71_RS42775 and QEN71_RS42780 are separated by 27 nucleotides QEN71_RS42780 and QEN71_RS42785 overlap by 1 nucleotides QEN71_RS42785 and QEN71_RS42790 are separated by 88 nucleotides
QEN71_RS42770: QEN71_RS42770 - site-specific integrase, at 32,832 to 33,710
_RS42770
QEN71_RS42775: QEN71_RS42775 - transposase zinc-binding domain-containing protein, at 33,719 to 33,976
_RS42775
QEN71_RS42780: QEN71_RS42780 - transposase, at 34,004 to 34,546
_RS42780
QEN71_RS42785: QEN71_RS42785 - IS66 family insertion sequence element accessory protein TnpB, at 34,546 to 34,899
_RS42785
QEN71_RS42790: QEN71_RS42790 - IS66 family transposase, at 34,988 to 36,628
_RS42790
Position (kb) 34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 33.841 kb on + strand, within QEN71_RS42775 at 33.902 kb on + strand, within QEN71_RS42775 at 33.971 kb on - strand at 33.978 kb on - strand at 34.055 kb on - strand at 34.065 kb on + strand, within QEN71_RS42780 at 34.065 kb on + strand, within QEN71_RS42780 at 34.066 kb on - strand, within QEN71_RS42780 at 34.066 kb on - strand, within QEN71_RS42780 at 34.255 kb on + strand, within QEN71_RS42780 at 34.489 kb on + strand, within QEN71_RS42780 at 34.489 kb on + strand, within QEN71_RS42780 at 34.489 kb on + strand, within QEN71_RS42780 at 34.489 kb on + strand, within QEN71_RS42780 at 34.490 kb on - strand, within QEN71_RS42780 at 34.490 kb on - strand, within QEN71_RS42780 at 34.490 kb on - strand, within QEN71_RS42780 at 34.576 kb on + strand at 34.576 kb on + strand at 34.617 kb on + strand, within QEN71_RS42785 at 34.617 kb on + strand, within QEN71_RS42785 at 34.693 kb on - strand, within QEN71_RS42785 at 34.693 kb on - strand, within QEN71_RS42785 at 34.693 kb on - strand, within QEN71_RS42785 at 34.693 kb on - strand, within QEN71_RS42785 at 34.721 kb on - strand, within QEN71_RS42785 at 34.882 kb on + strand at 34.883 kb on - strand at 34.897 kb on + strand at 34.905 kb on + strand at 34.916 kb on + strand at 34.950 kb on - strand at 34.950 kb on - strand at 35.017 kb on - strand at 35.037 kb on - strand at 35.037 kb on - strand at 35.037 kb on - strand at 35.239 kb on + strand, within QEN71_RS42790 at 35.240 kb on - strand, within QEN71_RS42790 at 35.324 kb on + strand, within QEN71_RS42790 at 35.324 kb on + strand, within QEN71_RS42790 at 35.325 kb on - strand, within QEN71_RS42790 at 35.325 kb on - strand, within QEN71_RS42790 at 35.325 kb on - strand, within QEN71_RS42790 at 35.348 kb on + strand, within QEN71_RS42790 at 35.348 kb on + strand, within QEN71_RS42790 at 35.349 kb on - strand, within QEN71_RS42790 at 35.405 kb on - strand, within QEN71_RS42790 at 35.477 kb on + strand, within QEN71_RS42790 at 35.477 kb on + strand, within QEN71_RS42790 at 35.541 kb on + strand, within QEN71_RS42790 at 35.542 kb on - strand, within QEN71_RS42790 at 35.625 kb on - strand, within QEN71_RS42790 at 35.714 kb on + strand, within QEN71_RS42790 at 35.714 kb on + strand, within QEN71_RS42790 at 35.715 kb on - strand, within QEN71_RS42790 at 35.715 kb on - strand, within QEN71_RS42790 at 35.738 kb on + strand, within QEN71_RS42790 at 35.738 kb on + strand, within QEN71_RS42790 at 35.831 kb on + strand, within QEN71_RS42790 at 35.831 kb on + strand, within QEN71_RS42790 at 35.831 kb on + strand, within QEN71_RS42790 at 35.831 kb on + strand, within QEN71_RS42790 at 35.832 kb on - strand, within QEN71_RS42790 at 35.832 kb on - strand, within QEN71_RS42790
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 33,841 + QEN71_RS42775 0.47 +0.6 33,902 + QEN71_RS42775 0.71 -0.1 33,971 - +1.9 33,978 - +0.3 34,055 - -0.8 34,065 + QEN71_RS42780 0.11 -0.6 34,065 + QEN71_RS42780 0.11 +0.3 34,066 - QEN71_RS42780 0.11 +0.7 34,066 - QEN71_RS42780 0.11 +0.9 34,255 + QEN71_RS42780 0.46 +0.1 34,489 + QEN71_RS42780 0.89 +1.5 34,489 + QEN71_RS42780 0.89 +0.7 34,489 + QEN71_RS42780 0.89 -0.7 34,489 + QEN71_RS42780 0.89 +0.0 34,490 - QEN71_RS42780 0.90 -0.4 34,490 - QEN71_RS42780 0.90 -0.4 34,490 - QEN71_RS42780 0.90 -0.5 34,576 + +1.4 34,576 + +0.4 34,617 + QEN71_RS42785 0.20 -0.5 34,617 + QEN71_RS42785 0.20 -0.1 34,693 - QEN71_RS42785 0.42 -0.1 34,693 - QEN71_RS42785 0.42 -1.1 34,693 - QEN71_RS42785 0.42 -0.5 34,693 - QEN71_RS42785 0.42 -3.0 34,721 - QEN71_RS42785 0.49 +0.6 34,882 + +0.1 34,883 - +1.0 34,897 + -0.4 34,905 + +0.9 34,916 + -0.8 34,950 - +0.4 34,950 - +0.1 35,017 - -0.3 35,037 - +1.5 35,037 - -0.7 35,037 - +0.2 35,239 + QEN71_RS42790 0.15 +1.1 35,240 - QEN71_RS42790 0.15 -1.1 35,324 + QEN71_RS42790 0.20 +1.9 35,324 + QEN71_RS42790 0.20 +1.6 35,325 - QEN71_RS42790 0.21 -0.1 35,325 - QEN71_RS42790 0.21 +1.9 35,325 - QEN71_RS42790 0.21 -0.1 35,348 + QEN71_RS42790 0.22 -0.2 35,348 + QEN71_RS42790 0.22 -1.6 35,349 - QEN71_RS42790 0.22 -0.5 35,405 - QEN71_RS42790 0.25 -0.7 35,477 + QEN71_RS42790 0.30 -0.5 35,477 + QEN71_RS42790 0.30 +0.0 35,541 + QEN71_RS42790 0.34 -0.1 35,542 - QEN71_RS42790 0.34 +0.4 35,625 - QEN71_RS42790 0.39 -0.7 35,714 + QEN71_RS42790 0.44 -1.8 35,714 + QEN71_RS42790 0.44 -0.5 35,715 - QEN71_RS42790 0.44 +0.5 35,715 - QEN71_RS42790 0.44 -0.1 35,738 + QEN71_RS42790 0.46 +0.0 35,738 + QEN71_RS42790 0.46 +1.9 35,831 + QEN71_RS42790 0.51 +0.7 35,831 + QEN71_RS42790 0.51 +0.6 35,831 + QEN71_RS42790 0.51 -1.1 35,831 + QEN71_RS42790 0.51 -0.8 35,832 - QEN71_RS42790 0.51 -0.1 35,832 - QEN71_RS42790 0.51 -0.7
Or see this region's nucleotide sequence