Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42620 and QEN71_RS42625 are separated by 582 nucleotides QEN71_RS42625 and QEN71_RS42630 are separated by 99 nucleotides
QEN71_RS42620: QEN71_RS42620 - nickel-dependent hydrogenase large subunit, at 612,771 to 613,771
_RS42620
QEN71_RS42625: QEN71_RS42625 - HypC/HybG/HupF family hydrogenase formation chaperone, at 614,354 to 614,518
_RS42625
QEN71_RS42630: QEN71_RS42630 - hypothetical protein, at 614,618 to 614,761
_RS42630
Position (kb) 614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 613.519 kb on + strand, within QEN71_RS42620 at 613.520 kb on - strand, within QEN71_RS42620 at 613.524 kb on - strand, within QEN71_RS42620 at 613.531 kb on + strand, within QEN71_RS42620 at 613.532 kb on - strand, within QEN71_RS42620 at 613.568 kb on + strand, within QEN71_RS42620 at 613.568 kb on + strand, within QEN71_RS42620 at 613.569 kb on - strand, within QEN71_RS42620 at 613.569 kb on - strand, within QEN71_RS42620 at 613.970 kb on - strand at 613.970 kb on - strand at 614.141 kb on - strand at 614.297 kb on + strand at 614.297 kb on + strand at 614.297 kb on + strand at 614.307 kb on + strand at 614.481 kb on + strand, within QEN71_RS42625 at 614.482 kb on - strand, within QEN71_RS42625 at 614.624 kb on + strand at 614.645 kb on - strand, within QEN71_RS42630 at 614.674 kb on + strand, within QEN71_RS42630 at 614.675 kb on - strand, within QEN71_RS42630 at 614.743 kb on - strand, within QEN71_RS42630 at 614.850 kb on - strand at 614.931 kb on + strand at 614.932 kb on - strand at 614.933 kb on + strand at 614.934 kb on - strand at 614.934 kb on - strand at 615.150 kb on + strand at 615.228 kb on + strand at 615.229 kb on - strand at 615.229 kb on - strand at 615.258 kb on - strand at 615.365 kb on + strand at 615.365 kb on + strand at 615.366 kb on - strand at 615.459 kb on + strand at 615.459 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 613,519 + QEN71_RS42620 0.75 -2.5 613,520 - QEN71_RS42620 0.75 +0.7 613,524 - QEN71_RS42620 0.75 +0.9 613,531 + QEN71_RS42620 0.76 -1.7 613,532 - QEN71_RS42620 0.76 -0.9 613,568 + QEN71_RS42620 0.80 +0.6 613,568 + QEN71_RS42620 0.80 -0.4 613,569 - QEN71_RS42620 0.80 -0.4 613,569 - QEN71_RS42620 0.80 -1.1 613,970 - +0.0 613,970 - +0.6 614,141 - +1.5 614,297 + +1.6 614,297 + -0.0 614,297 + -0.1 614,307 + +0.7 614,481 + QEN71_RS42625 0.77 -0.6 614,482 - QEN71_RS42625 0.78 -1.3 614,624 + -0.9 614,645 - QEN71_RS42630 0.19 +1.5 614,674 + QEN71_RS42630 0.39 -2.5 614,675 - QEN71_RS42630 0.40 +0.9 614,743 - QEN71_RS42630 0.87 -2.0 614,850 - -0.3 614,931 + +0.8 614,932 - -0.1 614,933 + +0.1 614,934 - -0.0 614,934 - +0.4 615,150 + +0.2 615,228 + -0.3 615,229 - +0.5 615,229 - -1.4 615,258 - -0.9 615,365 + +0.1 615,365 + -0.5 615,366 - -2.8 615,459 + -1.1 615,459 + -1.7
Or see this region's nucleotide sequence