Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS42340

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS42335 and QEN71_RS42340 are separated by 205 nucleotidesQEN71_RS42340 and QEN71_RS42345 are separated by 407 nucleotides QEN71_RS42335: QEN71_RS42335 - IS5 family transposase, at 547,010 to 548,463 _RS42335 QEN71_RS42340: QEN71_RS42340 - tyrosine-type recombinase/integrase, at 548,669 to 549,010 _RS42340 QEN71_RS42345: QEN71_RS42345 - hypothetical protein, at 549,418 to 549,617 _RS42345 Position (kb) 548 549 550Strain fitness (log2 ratio) -1 0 1at 547.669 kb on + strand, within QEN71_RS42335at 547.918 kb on + strand, within QEN71_RS42335at 548.003 kb on - strand, within QEN71_RS42335at 548.481 kb on - strandat 548.670 kb on + strandat 548.723 kb on - strand, within QEN71_RS42340at 548.723 kb on - strand, within QEN71_RS42340at 548.723 kb on - strand, within QEN71_RS42340at 549.012 kb on + strandat 549.012 kb on + strandat 549.493 kb on - strand, within QEN71_RS42345at 549.828 kb on - strandat 549.889 kb on - strandat 549.951 kb on + strandat 549.955 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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547,669 + QEN71_RS42335 0.45 -0.4
547,918 + QEN71_RS42335 0.62 +0.1
548,003 - QEN71_RS42335 0.68 -0.6
548,481 - -0.2
548,670 + -1.1
548,723 - QEN71_RS42340 0.16 -0.1
548,723 - QEN71_RS42340 0.16 -0.8
548,723 - QEN71_RS42340 0.16 -0.4
549,012 + -1.1
549,012 + -0.1
549,493 - QEN71_RS42345 0.38 -0.5
549,828 - +0.6
549,889 - -0.3
549,951 + -0.2
549,955 - -0.1

Or see this region's nucleotide sequence