Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41555 and QEN71_RS41560 are separated by 377 nucleotides QEN71_RS41560 and QEN71_RS41565 overlap by 1 nucleotides QEN71_RS41565 and QEN71_RS41570 overlap by 1 nucleotides
QEN71_RS41555: QEN71_RS41555 - LysR family transcriptional regulator, at 397,974 to 398,897
_RS41555
QEN71_RS41560: QEN71_RS41560 - hypothetical protein, at 399,275 to 399,583
_RS41560
QEN71_RS41565: QEN71_RS41565 - hypothetical protein, at 399,583 to 399,945
_RS41565
QEN71_RS41570: QEN71_RS41570 - divalent metal cation transporter, at 399,945 to 401,158
_RS41570
Position (kb) 399
400 Strain fitness (log2 ratio) -2
-1
0
1 at 398.429 kb on + strand, within QEN71_RS41555 at 398.430 kb on - strand, within QEN71_RS41555 at 398.430 kb on - strand, within QEN71_RS41555 at 398.624 kb on + strand, within QEN71_RS41555 at 398.709 kb on + strand, within QEN71_RS41555 at 398.801 kb on + strand, within QEN71_RS41555 at 398.801 kb on + strand, within QEN71_RS41555 at 398.802 kb on - strand, within QEN71_RS41555 at 398.802 kb on - strand, within QEN71_RS41555 at 398.846 kb on + strand at 398.847 kb on - strand at 398.911 kb on + strand at 398.982 kb on + strand at 398.983 kb on - strand at 398.999 kb on - strand at 399.004 kb on - strand at 399.040 kb on + strand at 399.041 kb on - strand at 399.181 kb on + strand at 399.410 kb on + strand, within QEN71_RS41560 at 399.419 kb on + strand, within QEN71_RS41560 at 399.420 kb on - strand, within QEN71_RS41560 at 399.420 kb on - strand, within QEN71_RS41560 at 399.524 kb on + strand, within QEN71_RS41560 at 399.568 kb on + strand at 399.651 kb on + strand, within QEN71_RS41565 at 399.785 kb on + strand, within QEN71_RS41565 at 399.946 kb on + strand at 399.946 kb on + strand at 399.947 kb on - strand at 399.947 kb on - strand at 400.060 kb on + strand at 400.060 kb on + strand at 400.137 kb on + strand, within QEN71_RS41570 at 400.138 kb on - strand, within QEN71_RS41570 at 400.138 kb on - strand, within QEN71_RS41570 at 400.204 kb on + strand, within QEN71_RS41570 at 400.204 kb on + strand, within QEN71_RS41570 at 400.204 kb on + strand, within QEN71_RS41570 at 400.282 kb on + strand, within QEN71_RS41570 at 400.282 kb on + strand, within QEN71_RS41570 at 400.283 kb on - strand, within QEN71_RS41570 at 400.283 kb on - strand, within QEN71_RS41570 at 400.350 kb on + strand, within QEN71_RS41570 at 400.351 kb on - strand, within QEN71_RS41570 at 400.351 kb on - strand, within QEN71_RS41570 at 400.402 kb on + strand, within QEN71_RS41570 at 400.402 kb on + strand, within QEN71_RS41570 at 400.402 kb on + strand, within QEN71_RS41570 at 400.402 kb on + strand, within QEN71_RS41570 at 400.402 kb on + strand, within QEN71_RS41570 at 400.402 kb on + strand, within QEN71_RS41570 at 400.403 kb on - strand, within QEN71_RS41570 at 400.403 kb on - strand, within QEN71_RS41570 at 400.403 kb on - strand, within QEN71_RS41570 at 400.403 kb on - strand, within QEN71_RS41570 at 400.403 kb on - strand, within QEN71_RS41570 at 400.403 kb on - strand, within QEN71_RS41570 at 400.403 kb on - strand, within QEN71_RS41570 at 400.403 kb on - strand, within QEN71_RS41570 at 400.490 kb on + strand, within QEN71_RS41570 at 400.525 kb on + strand, within QEN71_RS41570 at 400.525 kb on + strand, within QEN71_RS41570 at 400.564 kb on + strand, within QEN71_RS41570 at 400.564 kb on + strand, within QEN71_RS41570 at 400.565 kb on - strand, within QEN71_RS41570 at 400.565 kb on - strand, within QEN71_RS41570
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 398,429 + QEN71_RS41555 0.49 -0.4 398,430 - QEN71_RS41555 0.49 -0.8 398,430 - QEN71_RS41555 0.49 +0.3 398,624 + QEN71_RS41555 0.70 -1.4 398,709 + QEN71_RS41555 0.80 +0.3 398,801 + QEN71_RS41555 0.90 -1.2 398,801 + QEN71_RS41555 0.90 +0.2 398,802 - QEN71_RS41555 0.90 -0.9 398,802 - QEN71_RS41555 0.90 +0.1 398,846 + +0.3 398,847 - -0.1 398,911 + -0.1 398,982 + -0.1 398,983 - +0.0 398,999 - -0.5 399,004 - -1.1 399,040 + -1.1 399,041 - -2.0 399,181 + -0.5 399,410 + QEN71_RS41560 0.44 -1.2 399,419 + QEN71_RS41560 0.47 +0.3 399,420 - QEN71_RS41560 0.47 -0.7 399,420 - QEN71_RS41560 0.47 +0.9 399,524 + QEN71_RS41560 0.81 -1.9 399,568 + +0.4 399,651 + QEN71_RS41565 0.19 -1.9 399,785 + QEN71_RS41565 0.56 -0.7 399,946 + +0.3 399,946 + +0.1 399,947 - -0.1 399,947 - -0.5 400,060 + +0.3 400,060 + -0.0 400,137 + QEN71_RS41570 0.16 -0.7 400,138 - QEN71_RS41570 0.16 +0.2 400,138 - QEN71_RS41570 0.16 -0.5 400,204 + QEN71_RS41570 0.21 +0.4 400,204 + QEN71_RS41570 0.21 +0.0 400,204 + QEN71_RS41570 0.21 +0.3 400,282 + QEN71_RS41570 0.28 -0.7 400,282 + QEN71_RS41570 0.28 +0.6 400,283 - QEN71_RS41570 0.28 +0.1 400,283 - QEN71_RS41570 0.28 -0.1 400,350 + QEN71_RS41570 0.33 -2.0 400,351 - QEN71_RS41570 0.33 +0.1 400,351 - QEN71_RS41570 0.33 +0.3 400,402 + QEN71_RS41570 0.38 +1.3 400,402 + QEN71_RS41570 0.38 +1.5 400,402 + QEN71_RS41570 0.38 -1.6 400,402 + QEN71_RS41570 0.38 -0.7 400,402 + QEN71_RS41570 0.38 -1.1 400,402 + QEN71_RS41570 0.38 -1.1 400,403 - QEN71_RS41570 0.38 +1.0 400,403 - QEN71_RS41570 0.38 -1.4 400,403 - QEN71_RS41570 0.38 +1.7 400,403 - QEN71_RS41570 0.38 -0.6 400,403 - QEN71_RS41570 0.38 -1.4 400,403 - QEN71_RS41570 0.38 +0.3 400,403 - QEN71_RS41570 0.38 +0.0 400,403 - QEN71_RS41570 0.38 +0.5 400,490 + QEN71_RS41570 0.45 +0.3 400,525 + QEN71_RS41570 0.48 -0.3 400,525 + QEN71_RS41570 0.48 -0.3 400,564 + QEN71_RS41570 0.51 +0.2 400,564 + QEN71_RS41570 0.51 +0.0 400,565 - QEN71_RS41570 0.51 -0.8 400,565 - QEN71_RS41570 0.51 -0.2
Or see this region's nucleotide sequence