Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS41365

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS41355 and QEN71_RS41360 are separated by 4 nucleotidesQEN71_RS41360 and QEN71_RS41365 are separated by 121 nucleotidesQEN71_RS41365 and QEN71_RS41370 are separated by 147 nucleotides QEN71_RS41355: QEN71_RS41355 - branched-chain amino acid ABC transporter substrate-binding protein, at 347,537 to 348,673 _RS41355 QEN71_RS41360: QEN71_RS41360 - Lrp/AsnC family transcriptional regulator, at 348,678 to 349,154 _RS41360 QEN71_RS41365: QEN71_RS41365 - M20 aminoacylase family protein, at 349,276 to 350,439 _RS41365 QEN71_RS41370: QEN71_RS41370 - diaminopropionate ammonia-lyase, at 350,587 to 351,816 _RS41370 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1 2at 348.356 kb on + strand, within QEN71_RS41355at 348.452 kb on + strand, within QEN71_RS41355at 348.452 kb on + strand, within QEN71_RS41355at 348.452 kb on + strand, within QEN71_RS41355at 348.452 kb on + strand, within QEN71_RS41355at 348.468 kb on - strand, within QEN71_RS41355at 348.468 kb on - strand, within QEN71_RS41355at 348.531 kb on - strand, within QEN71_RS41355at 348.531 kb on - strand, within QEN71_RS41355at 348.593 kb on - strandat 348.799 kb on + strand, within QEN71_RS41360at 348.799 kb on + strand, within QEN71_RS41360at 348.800 kb on - strand, within QEN71_RS41360at 348.800 kb on - strand, within QEN71_RS41360at 348.825 kb on + strand, within QEN71_RS41360at 348.826 kb on - strand, within QEN71_RS41360at 348.856 kb on + strand, within QEN71_RS41360at 348.857 kb on - strand, within QEN71_RS41360at 348.857 kb on - strand, within QEN71_RS41360at 348.857 kb on - strand, within QEN71_RS41360at 348.859 kb on + strand, within QEN71_RS41360at 348.860 kb on - strand, within QEN71_RS41360at 348.964 kb on + strand, within QEN71_RS41360at 348.965 kb on - strand, within QEN71_RS41360at 348.997 kb on + strand, within QEN71_RS41360at 348.997 kb on + strand, within QEN71_RS41360at 348.997 kb on + strand, within QEN71_RS41360at 348.998 kb on - strand, within QEN71_RS41360at 348.998 kb on - strand, within QEN71_RS41360at 349.008 kb on + strand, within QEN71_RS41360at 349.008 kb on + strand, within QEN71_RS41360at 349.008 kb on + strand, within QEN71_RS41360at 349.009 kb on - strand, within QEN71_RS41360at 349.009 kb on - strand, within QEN71_RS41360at 349.009 kb on - strand, within QEN71_RS41360at 349.214 kb on + strandat 349.236 kb on - strandat 349.318 kb on + strandat 349.319 kb on - strandat 349.319 kb on - strandat 349.319 kb on - strandat 349.360 kb on - strandat 349.360 kb on - strandat 349.369 kb on + strandat 349.370 kb on - strandat 349.370 kb on - strandat 349.503 kb on + strand, within QEN71_RS41365at 349.504 kb on - strand, within QEN71_RS41365at 349.968 kb on + strand, within QEN71_RS41365at 349.981 kb on - strand, within QEN71_RS41365at 350.088 kb on - strand, within QEN71_RS41365at 350.088 kb on - strand, within QEN71_RS41365at 350.135 kb on - strand, within QEN71_RS41365at 350.359 kb on + strandat 350.437 kb on + strandat 350.564 kb on - strandat 350.564 kb on - strandat 350.564 kb on - strandat 350.654 kb on + strandat 350.654 kb on + strandat 350.655 kb on - strandat 350.655 kb on - strandat 350.733 kb on - strand, within QEN71_RS41370at 350.837 kb on + strand, within QEN71_RS41370at 350.838 kb on - strand, within QEN71_RS41370at 350.838 kb on - strand, within QEN71_RS41370at 350.838 kb on - strand, within QEN71_RS41370at 351.059 kb on - strand, within QEN71_RS41370at 351.091 kb on + strand, within QEN71_RS41370at 351.091 kb on + strand, within QEN71_RS41370at 351.091 kb on + strand, within QEN71_RS41370at 351.091 kb on + strand, within QEN71_RS41370at 351.092 kb on - strand, within QEN71_RS41370at 351.092 kb on - strand, within QEN71_RS41370at 351.092 kb on - strand, within QEN71_RS41370at 351.163 kb on + strand, within QEN71_RS41370at 351.163 kb on + strand, within QEN71_RS41370at 351.164 kb on - strand, within QEN71_RS41370at 351.173 kb on - strand, within QEN71_RS41370at 351.194 kb on + strand, within QEN71_RS41370at 351.194 kb on + strand, within QEN71_RS41370at 351.194 kb on + strand, within QEN71_RS41370at 351.194 kb on + strand, within QEN71_RS41370at 351.194 kb on + strand, within QEN71_RS41370at 351.194 kb on + strand, within QEN71_RS41370at 351.194 kb on + strand, within QEN71_RS41370at 351.195 kb on - strand, within QEN71_RS41370at 351.195 kb on - strand, within QEN71_RS41370at 351.195 kb on - strand, within QEN71_RS41370at 351.275 kb on + strand, within QEN71_RS41370at 351.275 kb on + strand, within QEN71_RS41370at 351.276 kb on - strand, within QEN71_RS41370at 351.276 kb on - strand, within QEN71_RS41370at 351.276 kb on - strand, within QEN71_RS41370at 351.276 kb on - strand, within QEN71_RS41370at 351.276 kb on - strand, within QEN71_RS41370at 351.276 kb on - strand, within QEN71_RS41370at 351.322 kb on + strand, within QEN71_RS41370at 351.394 kb on + strand, within QEN71_RS41370at 351.394 kb on + strand, within QEN71_RS41370

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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348,356 + QEN71_RS41355 0.72 -0.7
348,452 + QEN71_RS41355 0.80 +0.7
348,452 + QEN71_RS41355 0.80 -0.5
348,452 + QEN71_RS41355 0.80 -0.5
348,452 + QEN71_RS41355 0.80 +0.0
348,468 - QEN71_RS41355 0.82 +1.0
348,468 - QEN71_RS41355 0.82 +0.4
348,531 - QEN71_RS41355 0.87 +0.5
348,531 - QEN71_RS41355 0.87 +0.6
348,593 - -0.5
348,799 + QEN71_RS41360 0.25 +0.1
348,799 + QEN71_RS41360 0.25 -1.6
348,800 - QEN71_RS41360 0.26 -0.2
348,800 - QEN71_RS41360 0.26 -0.0
348,825 + QEN71_RS41360 0.31 -1.3
348,826 - QEN71_RS41360 0.31 -0.4
348,856 + QEN71_RS41360 0.37 -0.6
348,857 - QEN71_RS41360 0.38 +0.7
348,857 - QEN71_RS41360 0.38 -0.5
348,857 - QEN71_RS41360 0.38 +0.4
348,859 + QEN71_RS41360 0.38 +0.3
348,860 - QEN71_RS41360 0.38 +0.3
348,964 + QEN71_RS41360 0.60 -0.3
348,965 - QEN71_RS41360 0.60 -0.3
348,997 + QEN71_RS41360 0.67 -0.9
348,997 + QEN71_RS41360 0.67 -0.3
348,997 + QEN71_RS41360 0.67 -0.3
348,998 - QEN71_RS41360 0.67 -1.7
348,998 - QEN71_RS41360 0.67 -1.2
349,008 + QEN71_RS41360 0.69 -0.3
349,008 + QEN71_RS41360 0.69 -0.5
349,008 + QEN71_RS41360 0.69 +0.9
349,009 - QEN71_RS41360 0.69 +0.2
349,009 - QEN71_RS41360 0.69 +0.9
349,009 - QEN71_RS41360 0.69 -0.7
349,214 + +0.1
349,236 - +0.0
349,318 + +1.9
349,319 - +0.1
349,319 - +0.2
349,319 - +0.0
349,360 - +0.3
349,360 - -1.3
349,369 + -0.4
349,370 - -0.2
349,370 - +0.5
349,503 + QEN71_RS41365 0.20 +0.1
349,504 - QEN71_RS41365 0.20 -0.7
349,968 + QEN71_RS41365 0.59 -0.1
349,981 - QEN71_RS41365 0.61 -1.4
350,088 - QEN71_RS41365 0.70 -0.5
350,088 - QEN71_RS41365 0.70 -1.6
350,135 - QEN71_RS41365 0.74 -1.7
350,359 + +1.2
350,437 + +1.3
350,564 - -0.7
350,564 - -0.9
350,564 - +0.5
350,654 + -0.8
350,654 + -0.1
350,655 - -0.6
350,655 - -0.1
350,733 - QEN71_RS41370 0.12 +0.1
350,837 + QEN71_RS41370 0.20 -0.7
350,838 - QEN71_RS41370 0.20 -0.1
350,838 - QEN71_RS41370 0.20 +0.3
350,838 - QEN71_RS41370 0.20 +0.5
351,059 - QEN71_RS41370 0.38 +0.4
351,091 + QEN71_RS41370 0.41 +0.6
351,091 + QEN71_RS41370 0.41 +1.0
351,091 + QEN71_RS41370 0.41 -0.0
351,091 + QEN71_RS41370 0.41 -0.8
351,092 - QEN71_RS41370 0.41 -0.1
351,092 - QEN71_RS41370 0.41 -1.0
351,092 - QEN71_RS41370 0.41 +1.1
351,163 + QEN71_RS41370 0.47 -0.1
351,163 + QEN71_RS41370 0.47 -0.1
351,164 - QEN71_RS41370 0.47 -0.9
351,173 - QEN71_RS41370 0.48 -0.8
351,194 + QEN71_RS41370 0.49 -0.1
351,194 + QEN71_RS41370 0.49 -0.5
351,194 + QEN71_RS41370 0.49 -0.6
351,194 + QEN71_RS41370 0.49 +0.9
351,194 + QEN71_RS41370 0.49 +0.9
351,194 + QEN71_RS41370 0.49 +0.5
351,194 + QEN71_RS41370 0.49 -0.1
351,195 - QEN71_RS41370 0.49 -1.1
351,195 - QEN71_RS41370 0.49 -1.8
351,195 - QEN71_RS41370 0.49 -0.5
351,275 + QEN71_RS41370 0.56 +0.3
351,275 + QEN71_RS41370 0.56 -0.8
351,276 - QEN71_RS41370 0.56 +1.2
351,276 - QEN71_RS41370 0.56 -0.3
351,276 - QEN71_RS41370 0.56 -0.1
351,276 - QEN71_RS41370 0.56 -1.8
351,276 - QEN71_RS41370 0.56 +0.4
351,276 - QEN71_RS41370 0.56 +0.5
351,322 + QEN71_RS41370 0.60 -0.1
351,394 + QEN71_RS41370 0.66 -0.2
351,394 + QEN71_RS41370 0.66 +2.6

Or see this region's nucleotide sequence