Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS40015

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS40000 and QEN71_RS40005 are separated by 294 nucleotidesQEN71_RS40005 and QEN71_RS40010 overlap by 20 nucleotidesQEN71_RS40010 and QEN71_RS40015 are separated by 41 nucleotidesQEN71_RS40015 and QEN71_RS40020 are separated by 63 nucleotidesQEN71_RS40020 and QEN71_RS40025 overlap by 4 nucleotides QEN71_RS40000: QEN71_RS40000 - ATP-binding protein, at 54,421 to 54,894 _RS40000 QEN71_RS40005: QEN71_RS40005 - hypothetical protein, at 55,189 to 55,356 _RS40005 QEN71_RS40010: QEN71_RS40010 - recombinase family protein, at 55,337 to 55,510 _RS40010 QEN71_RS40015: QEN71_RS40015 - IS66 family transposase, at 55,552 to 57,117 _RS40015 QEN71_RS40020: QEN71_RS40020 - IS66 family insertion sequence element accessory protein TnpB, at 57,181 to 57,516 _RS40020 QEN71_RS40025: QEN71_RS40025 - transposase, at 57,513 to 57,905 _RS40025 Position (kb) 55 56 57 58Strain fitness (log2 ratio) -1 0 1at 55.377 kb on - strand, within QEN71_RS40010at 55.377 kb on - strand, within QEN71_RS40010at 55.377 kb on - strand, within QEN71_RS40010at 55.377 kb on - strand, within QEN71_RS40010at 55.377 kb on - strand, within QEN71_RS40010at 57.655 kb on - strand, within QEN71_RS40025at 57.655 kb on - strand, within QEN71_RS40025at 57.655 kb on - strand, within QEN71_RS40025at 57.910 kb on + strandat 57.929 kb on - strandat 57.929 kb on - strandat 58.006 kb on - strandat 58.006 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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55,377 - QEN71_RS40010 0.23 -0.1
55,377 - QEN71_RS40010 0.23 +0.1
55,377 - QEN71_RS40010 0.23 -0.9
55,377 - QEN71_RS40010 0.23 -0.7
55,377 - QEN71_RS40010 0.23 -0.5
57,655 - QEN71_RS40025 0.36 +0.3
57,655 - QEN71_RS40025 0.36 +0.1
57,655 - QEN71_RS40025 0.36 -0.2
57,910 + +1.7
57,929 - -0.3
57,929 - -1.7
58,006 - -0.7
58,006 - -0.6

Or see this region's nucleotide sequence