Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39355 and QEN71_RS39360 are separated by 277 nucleotides QEN71_RS39360 and QEN71_RS39365 are separated by 61 nucleotides QEN71_RS39365 and QEN71_RS39370 are separated by 45 nucleotides
QEN71_RS39355: QEN71_RS39355 - SDR family oxidoreductase, at 2,204,972 to 2,205,727
_RS39355
QEN71_RS39360: QEN71_RS39360 - lecithin retinol acyltransferase family protein, at 2,206,005 to 2,206,535
_RS39360
QEN71_RS39365: QEN71_RS39365 - DHA2 family efflux MFS transporter permease subunit, at 2,206,597 to 2,208,153
_RS39365
QEN71_RS39370: QEN71_RS39370 - efflux transporter outer membrane subunit, at 2,208,199 to 2,209,689
_RS39370
Position (kb)
2206
2207
2208
2209 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2205.774 kb on + strand at 2205.774 kb on + strand at 2205.775 kb on - strand at 2205.779 kb on - strand at 2205.901 kb on - strand at 2205.927 kb on + strand at 2205.928 kb on - strand at 2206.016 kb on - strand at 2206.779 kb on + strand, within QEN71_RS39365 at 2206.780 kb on - strand, within QEN71_RS39365 at 2206.883 kb on + strand, within QEN71_RS39365 at 2207.016 kb on + strand, within QEN71_RS39365 at 2207.107 kb on + strand, within QEN71_RS39365 at 2207.108 kb on - strand, within QEN71_RS39365 at 2207.108 kb on - strand, within QEN71_RS39365 at 2207.128 kb on + strand, within QEN71_RS39365 at 2207.129 kb on - strand, within QEN71_RS39365 at 2207.131 kb on - strand, within QEN71_RS39365 at 2207.180 kb on - strand, within QEN71_RS39365 at 2207.480 kb on + strand, within QEN71_RS39365 at 2207.729 kb on + strand, within QEN71_RS39365 at 2208.336 kb on + strand at 2208.336 kb on + strand at 2208.336 kb on + strand at 2208.571 kb on + strand, within QEN71_RS39370 at 2208.571 kb on + strand, within QEN71_RS39370 at 2208.571 kb on + strand, within QEN71_RS39370 at 2208.572 kb on - strand, within QEN71_RS39370 at 2208.572 kb on - strand, within QEN71_RS39370 at 2208.773 kb on - strand, within QEN71_RS39370 at 2208.773 kb on - strand, within QEN71_RS39370 at 2208.883 kb on - strand, within QEN71_RS39370 at 2209.055 kb on + strand, within QEN71_RS39370 at 2209.055 kb on + strand, within QEN71_RS39370 at 2209.056 kb on - strand, within QEN71_RS39370 at 2209.056 kb on - strand, within QEN71_RS39370
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 2,205,774 + +0.3 2,205,774 + +0.0 2,205,775 - +0.3 2,205,779 - +0.8 2,205,901 - +0.2 2,205,927 + +2.0 2,205,928 - -0.5 2,206,016 - +0.1 2,206,779 + QEN71_RS39365 0.12 +0.2 2,206,780 - QEN71_RS39365 0.12 -2.1 2,206,883 + QEN71_RS39365 0.18 -0.5 2,207,016 + QEN71_RS39365 0.27 +0.8 2,207,107 + QEN71_RS39365 0.33 +0.0 2,207,108 - QEN71_RS39365 0.33 +0.0 2,207,108 - QEN71_RS39365 0.33 -0.5 2,207,128 + QEN71_RS39365 0.34 +0.3 2,207,129 - QEN71_RS39365 0.34 -0.3 2,207,131 - QEN71_RS39365 0.34 +0.5 2,207,180 - QEN71_RS39365 0.37 -0.8 2,207,480 + QEN71_RS39365 0.57 +0.4 2,207,729 + QEN71_RS39365 0.73 -0.0 2,208,336 + -0.5 2,208,336 + -0.6 2,208,336 + -0.3 2,208,571 + QEN71_RS39370 0.25 +0.5 2,208,571 + QEN71_RS39370 0.25 -0.0 2,208,571 + QEN71_RS39370 0.25 -0.8 2,208,572 - QEN71_RS39370 0.25 -0.6 2,208,572 - QEN71_RS39370 0.25 -0.3 2,208,773 - QEN71_RS39370 0.38 +0.4 2,208,773 - QEN71_RS39370 0.38 -1.4 2,208,883 - QEN71_RS39370 0.46 -0.2 2,209,055 + QEN71_RS39370 0.57 -0.5 2,209,055 + QEN71_RS39370 0.57 -0.8 2,209,056 - QEN71_RS39370 0.57 +1.2 2,209,056 - QEN71_RS39370 0.57 -0.8
Or see this region's nucleotide sequence