Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39365

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39355 and QEN71_RS39360 are separated by 277 nucleotidesQEN71_RS39360 and QEN71_RS39365 are separated by 61 nucleotidesQEN71_RS39365 and QEN71_RS39370 are separated by 45 nucleotides QEN71_RS39355: QEN71_RS39355 - SDR family oxidoreductase, at 2,204,972 to 2,205,727 _RS39355 QEN71_RS39360: QEN71_RS39360 - lecithin retinol acyltransferase family protein, at 2,206,005 to 2,206,535 _RS39360 QEN71_RS39365: QEN71_RS39365 - DHA2 family efflux MFS transporter permease subunit, at 2,206,597 to 2,208,153 _RS39365 QEN71_RS39370: QEN71_RS39370 - efflux transporter outer membrane subunit, at 2,208,199 to 2,209,689 _RS39370 Position (kb) 2206 2207 2208 2209Strain fitness (log2 ratio) -2 -1 0 1 2at 2205.774 kb on + strandat 2205.774 kb on + strandat 2205.775 kb on - strandat 2205.779 kb on - strandat 2205.901 kb on - strandat 2205.927 kb on + strandat 2205.928 kb on - strandat 2206.016 kb on - strandat 2206.779 kb on + strand, within QEN71_RS39365at 2206.780 kb on - strand, within QEN71_RS39365at 2206.883 kb on + strand, within QEN71_RS39365at 2207.016 kb on + strand, within QEN71_RS39365at 2207.107 kb on + strand, within QEN71_RS39365at 2207.108 kb on - strand, within QEN71_RS39365at 2207.108 kb on - strand, within QEN71_RS39365at 2207.128 kb on + strand, within QEN71_RS39365at 2207.129 kb on - strand, within QEN71_RS39365at 2207.131 kb on - strand, within QEN71_RS39365at 2207.180 kb on - strand, within QEN71_RS39365at 2207.480 kb on + strand, within QEN71_RS39365at 2207.729 kb on + strand, within QEN71_RS39365at 2208.336 kb on + strandat 2208.336 kb on + strandat 2208.336 kb on + strandat 2208.571 kb on + strand, within QEN71_RS39370at 2208.571 kb on + strand, within QEN71_RS39370at 2208.571 kb on + strand, within QEN71_RS39370at 2208.572 kb on - strand, within QEN71_RS39370at 2208.572 kb on - strand, within QEN71_RS39370at 2208.773 kb on - strand, within QEN71_RS39370at 2208.773 kb on - strand, within QEN71_RS39370at 2208.883 kb on - strand, within QEN71_RS39370at 2209.055 kb on + strand, within QEN71_RS39370at 2209.055 kb on + strand, within QEN71_RS39370at 2209.056 kb on - strand, within QEN71_RS39370at 2209.056 kb on - strand, within QEN71_RS39370

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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2,205,774 + +0.3
2,205,774 + +0.0
2,205,775 - +0.3
2,205,779 - +0.8
2,205,901 - +0.2
2,205,927 + +2.0
2,205,928 - -0.5
2,206,016 - +0.1
2,206,779 + QEN71_RS39365 0.12 +0.2
2,206,780 - QEN71_RS39365 0.12 -2.1
2,206,883 + QEN71_RS39365 0.18 -0.5
2,207,016 + QEN71_RS39365 0.27 +0.8
2,207,107 + QEN71_RS39365 0.33 +0.0
2,207,108 - QEN71_RS39365 0.33 +0.0
2,207,108 - QEN71_RS39365 0.33 -0.5
2,207,128 + QEN71_RS39365 0.34 +0.3
2,207,129 - QEN71_RS39365 0.34 -0.3
2,207,131 - QEN71_RS39365 0.34 +0.5
2,207,180 - QEN71_RS39365 0.37 -0.8
2,207,480 + QEN71_RS39365 0.57 +0.4
2,207,729 + QEN71_RS39365 0.73 -0.0
2,208,336 + -0.5
2,208,336 + -0.6
2,208,336 + -0.3
2,208,571 + QEN71_RS39370 0.25 +0.5
2,208,571 + QEN71_RS39370 0.25 -0.0
2,208,571 + QEN71_RS39370 0.25 -0.8
2,208,572 - QEN71_RS39370 0.25 -0.6
2,208,572 - QEN71_RS39370 0.25 -0.3
2,208,773 - QEN71_RS39370 0.38 +0.4
2,208,773 - QEN71_RS39370 0.38 -1.4
2,208,883 - QEN71_RS39370 0.46 -0.2
2,209,055 + QEN71_RS39370 0.57 -0.5
2,209,055 + QEN71_RS39370 0.57 -0.8
2,209,056 - QEN71_RS39370 0.57 +1.2
2,209,056 - QEN71_RS39370 0.57 -0.8

Or see this region's nucleotide sequence