Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39260 and QEN71_RS39265 are separated by 133 nucleotides QEN71_RS39265 and QEN71_RS39270 are separated by 50 nucleotides
QEN71_RS39260: QEN71_RS39260 - NmrA/HSCARG family protein, at 2,186,262 to 2,187,131
_RS39260
QEN71_RS39265: QEN71_RS39265 - LysR family transcriptional regulator, at 2,187,265 to 2,188,137
_RS39265
QEN71_RS39270: QEN71_RS39270 - aminotransferase class V-fold PLP-dependent enzyme, at 2,188,188 to 2,189,315
_RS39270
Position (kb)
2187
2188
2189 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2186.299 kb on + strand at 2186.299 kb on + strand at 2186.470 kb on + strand, within QEN71_RS39260 at 2186.470 kb on + strand, within QEN71_RS39260 at 2186.503 kb on - strand, within QEN71_RS39260 at 2186.766 kb on + strand, within QEN71_RS39260 at 2186.815 kb on + strand, within QEN71_RS39260 at 2186.816 kb on - strand, within QEN71_RS39260 at 2186.842 kb on + strand, within QEN71_RS39260 at 2186.843 kb on - strand, within QEN71_RS39260 at 2186.843 kb on - strand, within QEN71_RS39260 at 2186.984 kb on + strand, within QEN71_RS39260 at 2186.984 kb on + strand, within QEN71_RS39260 at 2186.985 kb on - strand, within QEN71_RS39260 at 2187.107 kb on + strand at 2187.398 kb on + strand, within QEN71_RS39265 at 2188.136 kb on - strand at 2188.196 kb on + strand at 2188.385 kb on - strand, within QEN71_RS39270 at 2188.385 kb on - strand, within QEN71_RS39270 at 2188.389 kb on - strand, within QEN71_RS39270 at 2188.510 kb on + strand, within QEN71_RS39270 at 2188.576 kb on + strand, within QEN71_RS39270 at 2188.597 kb on + strand, within QEN71_RS39270 at 2188.770 kb on - strand, within QEN71_RS39270 at 2188.855 kb on + strand, within QEN71_RS39270 at 2188.856 kb on - strand, within QEN71_RS39270 at 2188.856 kb on - strand, within QEN71_RS39270
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 2,186,299 + +0.1 2,186,299 + +1.5 2,186,470 + QEN71_RS39260 0.24 -0.3 2,186,470 + QEN71_RS39260 0.24 -0.2 2,186,503 - QEN71_RS39260 0.28 -0.9 2,186,766 + QEN71_RS39260 0.58 -0.2 2,186,815 + QEN71_RS39260 0.64 +0.5 2,186,816 - QEN71_RS39260 0.64 -0.5 2,186,842 + QEN71_RS39260 0.67 -0.0 2,186,843 - QEN71_RS39260 0.67 -0.9 2,186,843 - QEN71_RS39260 0.67 -2.2 2,186,984 + QEN71_RS39260 0.83 +0.7 2,186,984 + QEN71_RS39260 0.83 +2.0 2,186,985 - QEN71_RS39260 0.83 -0.2 2,187,107 + -0.8 2,187,398 + QEN71_RS39265 0.15 -1.3 2,188,136 - -0.6 2,188,196 + -0.4 2,188,385 - QEN71_RS39270 0.17 -0.1 2,188,385 - QEN71_RS39270 0.17 -0.8 2,188,389 - QEN71_RS39270 0.18 -1.0 2,188,510 + QEN71_RS39270 0.29 -1.5 2,188,576 + QEN71_RS39270 0.34 -0.9 2,188,597 + QEN71_RS39270 0.36 +2.0 2,188,770 - QEN71_RS39270 0.52 -0.8 2,188,855 + QEN71_RS39270 0.59 -0.1 2,188,856 - QEN71_RS39270 0.59 -0.9 2,188,856 - QEN71_RS39270 0.59 -0.4
Or see this region's nucleotide sequence