Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38905

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38900 and QEN71_RS38905 are separated by 1 nucleotidesQEN71_RS38905 and QEN71_RS38910 are separated by 81 nucleotides QEN71_RS38900: QEN71_RS38900 - PLP-dependent aminotransferase family protein, at 2,105,791 to 2,107,254 _RS38900 QEN71_RS38905: QEN71_RS38905 - sigma factor-like helix-turn-helix DNA-binding protein, at 2,107,256 to 2,107,507 _RS38905 QEN71_RS38910: QEN71_RS38910 - SDR family oxidoreductase, at 2,107,589 to 2,108,332 _RS38910 Position (kb) 2107 2108Strain fitness (log2 ratio) -2 -1 0 1 2at 2106.401 kb on + strand, within QEN71_RS38900at 2106.405 kb on + strand, within QEN71_RS38900at 2106.405 kb on + strand, within QEN71_RS38900at 2106.405 kb on + strand, within QEN71_RS38900at 2106.406 kb on - strand, within QEN71_RS38900at 2106.578 kb on - strand, within QEN71_RS38900at 2106.578 kb on - strand, within QEN71_RS38900at 2106.688 kb on + strand, within QEN71_RS38900at 2106.814 kb on + strand, within QEN71_RS38900at 2106.815 kb on - strand, within QEN71_RS38900at 2106.964 kb on + strand, within QEN71_RS38900at 2107.400 kb on - strand, within QEN71_RS38905at 2107.590 kb on + strandat 2107.591 kb on - strandat 2107.591 kb on - strandat 2107.600 kb on + strandat 2107.600 kb on + strandat 2107.633 kb on - strandat 2108.361 kb on + strandat 2108.497 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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2,106,401 + QEN71_RS38900 0.42 -0.0
2,106,405 + QEN71_RS38900 0.42 -0.6
2,106,405 + QEN71_RS38900 0.42 +2.3
2,106,405 + QEN71_RS38900 0.42 +0.6
2,106,406 - QEN71_RS38900 0.42 +0.8
2,106,578 - QEN71_RS38900 0.54 -1.0
2,106,578 - QEN71_RS38900 0.54 -0.6
2,106,688 + QEN71_RS38900 0.61 +0.5
2,106,814 + QEN71_RS38900 0.70 +1.3
2,106,815 - QEN71_RS38900 0.70 +0.4
2,106,964 + QEN71_RS38900 0.80 -1.0
2,107,400 - QEN71_RS38905 0.57 -1.1
2,107,590 + -1.8
2,107,591 - +0.2
2,107,591 - -1.3
2,107,600 + -0.6
2,107,600 + -0.1
2,107,633 - +1.6
2,108,361 + +0.1
2,108,497 - -0.3

Or see this region's nucleotide sequence