Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38865

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38860 and QEN71_RS38865 are separated by 264 nucleotidesQEN71_RS38865 and QEN71_RS38870 are separated by 31 nucleotidesQEN71_RS38870 and QEN71_RS38875 are separated by 16 nucleotides QEN71_RS38860: QEN71_RS38860 - PLP-dependent aminotransferase family protein, at 2,096,573 to 2,098,027 _RS38860 QEN71_RS38865: QEN71_RS38865 - Ohr family peroxiredoxin, at 2,098,292 to 2,098,807 _RS38865 QEN71_RS38870: QEN71_RS38870 - DUF3331 domain-containing protein, at 2,098,839 to 2,099,249 _RS38870 QEN71_RS38875: QEN71_RS38875 - alpha/beta hydrolase, at 2,099,266 to 2,100,252 _RS38875 Position (kb) 2098 2099Strain fitness (log2 ratio) -1 0 1at 2097.509 kb on + strand, within QEN71_RS38860at 2097.572 kb on + strand, within QEN71_RS38860at 2097.573 kb on - strand, within QEN71_RS38860at 2097.704 kb on - strand, within QEN71_RS38860at 2097.828 kb on + strand, within QEN71_RS38860at 2098.058 kb on - strandat 2098.223 kb on + strandat 2098.224 kb on - strandat 2098.334 kb on + strandat 2098.335 kb on - strandat 2098.335 kb on - strandat 2098.363 kb on + strand, within QEN71_RS38865at 2098.363 kb on + strand, within QEN71_RS38865at 2099.090 kb on + strand, within QEN71_RS38870at 2099.266 kb on - strandat 2099.468 kb on - strand, within QEN71_RS38875at 2099.645 kb on - strand, within QEN71_RS38875

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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2,097,509 + QEN71_RS38860 0.64 +1.1
2,097,572 + QEN71_RS38860 0.69 +0.3
2,097,573 - QEN71_RS38860 0.69 +0.5
2,097,704 - QEN71_RS38860 0.78 -0.4
2,097,828 + QEN71_RS38860 0.86 -0.4
2,098,058 - +0.3
2,098,223 + -0.9
2,098,224 - +0.1
2,098,334 + -1.3
2,098,335 - +1.3
2,098,335 - -0.3
2,098,363 + QEN71_RS38865 0.14 -1.5
2,098,363 + QEN71_RS38865 0.14 -1.3
2,099,090 + QEN71_RS38870 0.61 -0.3
2,099,266 - -0.3
2,099,468 - QEN71_RS38875 0.20 +0.8
2,099,645 - QEN71_RS38875 0.38 -0.6

Or see this region's nucleotide sequence