Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS38860 and QEN71_RS38865 are separated by 264 nucleotides QEN71_RS38865 and QEN71_RS38870 are separated by 31 nucleotides QEN71_RS38870 and QEN71_RS38875 are separated by 16 nucleotides
QEN71_RS38860: QEN71_RS38860 - PLP-dependent aminotransferase family protein, at 2,096,573 to 2,098,027
_RS38860
QEN71_RS38865: QEN71_RS38865 - Ohr family peroxiredoxin, at 2,098,292 to 2,098,807
_RS38865
QEN71_RS38870: QEN71_RS38870 - DUF3331 domain-containing protein, at 2,098,839 to 2,099,249
_RS38870
QEN71_RS38875: QEN71_RS38875 - alpha/beta hydrolase, at 2,099,266 to 2,100,252
_RS38875
Position (kb)
2098
2099 Strain fitness (log2 ratio)
-1
0
1 at 2097.509 kb on + strand, within QEN71_RS38860 at 2097.572 kb on + strand, within QEN71_RS38860 at 2097.573 kb on - strand, within QEN71_RS38860 at 2097.704 kb on - strand, within QEN71_RS38860 at 2097.828 kb on + strand, within QEN71_RS38860 at 2098.058 kb on - strand at 2098.223 kb on + strand at 2098.224 kb on - strand at 2098.334 kb on + strand at 2098.335 kb on - strand at 2098.335 kb on - strand at 2098.363 kb on + strand, within QEN71_RS38865 at 2098.363 kb on + strand, within QEN71_RS38865 at 2099.090 kb on + strand, within QEN71_RS38870 at 2099.266 kb on - strand at 2099.468 kb on - strand, within QEN71_RS38875 at 2099.645 kb on - strand, within QEN71_RS38875
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 2,097,509 + QEN71_RS38860 0.64 +1.1 2,097,572 + QEN71_RS38860 0.69 +0.3 2,097,573 - QEN71_RS38860 0.69 +0.5 2,097,704 - QEN71_RS38860 0.78 -0.4 2,097,828 + QEN71_RS38860 0.86 -0.4 2,098,058 - +0.3 2,098,223 + -0.9 2,098,224 - +0.1 2,098,334 + -1.3 2,098,335 - +1.3 2,098,335 - -0.3 2,098,363 + QEN71_RS38865 0.14 -1.5 2,098,363 + QEN71_RS38865 0.14 -1.3 2,099,090 + QEN71_RS38870 0.61 -0.3 2,099,266 - -0.3 2,099,468 - QEN71_RS38875 0.20 +0.8 2,099,645 - QEN71_RS38875 0.38 -0.6
Or see this region's nucleotide sequence