Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37610

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37605 and QEN71_RS37610 are separated by 294 nucleotidesQEN71_RS37610 and QEN71_RS37615 overlap by 1 nucleotidesQEN71_RS37615 and QEN71_RS37620 are separated by 75 nucleotides QEN71_RS37605: QEN71_RS37605 - D-cysteine desulfhydrase family protein, at 1,807,803 to 1,808,816 _RS37605 QEN71_RS37610: QEN71_RS37610 - DUF2282 domain-containing protein, at 1,809,111 to 1,809,389 _RS37610 QEN71_RS37615: QEN71_RS37615 - DoxX family protein, at 1,809,389 to 1,809,886 _RS37615 QEN71_RS37620: QEN71_RS37620 - alpha/beta hydrolase, at 1,809,962 to 1,810,726 _RS37620 Position (kb) 1809 1810Strain fitness (log2 ratio) -2 -1 0 1at 1808.120 kb on + strand, within QEN71_RS37605at 1808.120 kb on + strand, within QEN71_RS37605at 1808.120 kb on + strand, within QEN71_RS37605at 1808.120 kb on + strand, within QEN71_RS37605at 1808.146 kb on + strand, within QEN71_RS37605at 1808.146 kb on + strand, within QEN71_RS37605at 1808.146 kb on + strand, within QEN71_RS37605at 1808.147 kb on - strand, within QEN71_RS37605at 1808.295 kb on + strand, within QEN71_RS37605at 1808.345 kb on - strand, within QEN71_RS37605at 1808.476 kb on + strand, within QEN71_RS37605at 1808.477 kb on - strand, within QEN71_RS37605at 1808.477 kb on - strand, within QEN71_RS37605at 1808.592 kb on - strand, within QEN71_RS37605at 1808.699 kb on - strand, within QEN71_RS37605at 1808.702 kb on + strand, within QEN71_RS37605at 1808.706 kb on + strand, within QEN71_RS37605at 1808.817 kb on - strandat 1808.817 kb on - strandat 1808.915 kb on + strandat 1809.078 kb on + strandat 1809.079 kb on - strandat 1809.079 kb on - strandat 1809.111 kb on - strandat 1809.333 kb on - strand, within QEN71_RS37610at 1809.666 kb on - strand, within QEN71_RS37615at 1809.768 kb on - strand, within QEN71_RS37615at 1809.961 kb on + strandat 1809.961 kb on + strandat 1809.961 kb on + strandat 1809.961 kb on + strandat 1809.962 kb on - strandat 1809.962 kb on - strandat 1809.962 kb on - strandat 1809.962 kb on - strandat 1809.962 kb on - strandat 1810.054 kb on - strand, within QEN71_RS37620at 1810.137 kb on - strand, within QEN71_RS37620at 1810.137 kb on - strand, within QEN71_RS37620

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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1,808,120 + QEN71_RS37605 0.31 -0.8
1,808,120 + QEN71_RS37605 0.31 -1.5
1,808,120 + QEN71_RS37605 0.31 +0.7
1,808,120 + QEN71_RS37605 0.31 +0.1
1,808,146 + QEN71_RS37605 0.34 -0.3
1,808,146 + QEN71_RS37605 0.34 -0.0
1,808,146 + QEN71_RS37605 0.34 -1.2
1,808,147 - QEN71_RS37605 0.34 -0.3
1,808,295 + QEN71_RS37605 0.49 -0.8
1,808,345 - QEN71_RS37605 0.53 +1.0
1,808,476 + QEN71_RS37605 0.66 +0.3
1,808,477 - QEN71_RS37605 0.66 +0.5
1,808,477 - QEN71_RS37605 0.66 -0.5
1,808,592 - QEN71_RS37605 0.78 +1.3
1,808,699 - QEN71_RS37605 0.88 -0.6
1,808,702 + QEN71_RS37605 0.89 -0.0
1,808,706 + QEN71_RS37605 0.89 +0.2
1,808,817 - +0.1
1,808,817 - -1.5
1,808,915 + +0.4
1,809,078 + -0.3
1,809,079 - +1.0
1,809,079 - +0.1
1,809,111 - +0.1
1,809,333 - QEN71_RS37610 0.80 -1.0
1,809,666 - QEN71_RS37615 0.56 -1.3
1,809,768 - QEN71_RS37615 0.76 +0.3
1,809,961 + -0.0
1,809,961 + +0.3
1,809,961 + +1.0
1,809,961 + -0.3
1,809,962 - +1.3
1,809,962 - -0.5
1,809,962 - -0.1
1,809,962 - -1.9
1,809,962 - -0.1
1,810,054 - QEN71_RS37620 0.12 -0.8
1,810,137 - QEN71_RS37620 0.23 +0.7
1,810,137 - QEN71_RS37620 0.23 +0.8

Or see this region's nucleotide sequence