Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36065

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36060 and QEN71_RS36065 are separated by 58 nucleotidesQEN71_RS36065 and QEN71_RS36070 are separated by 94 nucleotidesQEN71_RS36070 and QEN71_RS36075 are separated by 2 nucleotides QEN71_RS36060: QEN71_RS36060 - sugar ABC transporter ATP-binding protein, at 1,474,053 to 1,475,615 _RS36060 QEN71_RS36065: QEN71_RS36065 - sugar ABC transporter substrate-binding protein, at 1,475,674 to 1,476,783 _RS36065 QEN71_RS36070: QEN71_RS36070 - class II aldolase/adducin family protein, at 1,476,878 to 1,477,552 _RS36070 QEN71_RS36075: QEN71_RS36075 - S-methyl-5-thioribose-1-phosphate isomerase, at 1,477,555 to 1,478,643 _RS36075 Position (kb) 1475 1476 1477Strain fitness (log2 ratio) -2 -1 0 1at 1474.811 kb on - strand, within QEN71_RS36060at 1474.811 kb on - strand, within QEN71_RS36060at 1474.959 kb on - strand, within QEN71_RS36060at 1475.293 kb on + strand, within QEN71_RS36060at 1475.293 kb on + strand, within QEN71_RS36060at 1475.294 kb on - strand, within QEN71_RS36060at 1475.765 kb on + strandat 1475.765 kb on + strandat 1476.156 kb on + strand, within QEN71_RS36065at 1476.340 kb on - strand, within QEN71_RS36065at 1476.803 kb on - strandat 1476.846 kb on + strandat 1476.985 kb on - strand, within QEN71_RS36070at 1477.189 kb on - strand, within QEN71_RS36070at 1477.189 kb on - strand, within QEN71_RS36070at 1477.189 kb on - strand, within QEN71_RS36070at 1477.189 kb on - strand, within QEN71_RS36070at 1477.189 kb on - strand, within QEN71_RS36070at 1477.205 kb on - strand, within QEN71_RS36070

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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1,474,811 - QEN71_RS36060 0.48 -1.0
1,474,811 - QEN71_RS36060 0.48 +0.5
1,474,959 - QEN71_RS36060 0.58 +0.0
1,475,293 + QEN71_RS36060 0.79 +0.7
1,475,293 + QEN71_RS36060 0.79 +0.2
1,475,294 - QEN71_RS36060 0.79 +0.8
1,475,765 + +0.3
1,475,765 + +0.4
1,476,156 + QEN71_RS36065 0.43 -0.9
1,476,340 - QEN71_RS36065 0.60 -2.0
1,476,803 - -0.7
1,476,846 + +1.2
1,476,985 - QEN71_RS36070 0.16 -0.3
1,477,189 - QEN71_RS36070 0.46 -2.2
1,477,189 - QEN71_RS36070 0.46 +0.5
1,477,189 - QEN71_RS36070 0.46 +0.0
1,477,189 - QEN71_RS36070 0.46 +0.0
1,477,189 - QEN71_RS36070 0.46 +0.0
1,477,205 - QEN71_RS36070 0.48 +0.8

Or see this region's nucleotide sequence