Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35265

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35260 and QEN71_RS35265 are separated by 254 nucleotidesQEN71_RS35265 and QEN71_RS35270 are separated by 71 nucleotides QEN71_RS35260: QEN71_RS35260 - M15 family metallopeptidase, at 1,260,817 to 1,261,320 _RS35260 QEN71_RS35265: QEN71_RS35265 - hypothetical protein, at 1,261,575 to 1,262,330 _RS35265 QEN71_RS35270: QEN71_RS35270 - hypothetical protein, at 1,262,402 to 1,264,216 _RS35270 Position (kb) 1261 1262 1263Strain fitness (log2 ratio) -2 -1 0 1 2at 1260.699 kb on + strandat 1260.845 kb on + strandat 1260.857 kb on + strandat 1260.858 kb on - strandat 1261.234 kb on + strand, within QEN71_RS35260at 1261.355 kb on - strandat 1261.355 kb on - strandat 1261.378 kb on + strandat 1261.413 kb on - strandat 1261.429 kb on + strandat 1261.429 kb on + strandat 1261.709 kb on + strand, within QEN71_RS35265at 1261.709 kb on + strand, within QEN71_RS35265at 1262.001 kb on - strand, within QEN71_RS35265at 1262.238 kb on + strand, within QEN71_RS35265at 1262.239 kb on - strand, within QEN71_RS35265at 1262.345 kb on + strandat 1262.346 kb on - strandat 1262.533 kb on + strandat 1262.533 kb on + strandat 1262.534 kb on - strandat 1262.668 kb on + strand, within QEN71_RS35270at 1262.668 kb on + strand, within QEN71_RS35270at 1262.700 kb on - strand, within QEN71_RS35270at 1262.705 kb on + strand, within QEN71_RS35270at 1262.705 kb on + strand, within QEN71_RS35270at 1262.706 kb on - strand, within QEN71_RS35270at 1262.750 kb on + strand, within QEN71_RS35270at 1262.751 kb on - strand, within QEN71_RS35270at 1262.751 kb on - strand, within QEN71_RS35270at 1262.753 kb on - strand, within QEN71_RS35270at 1262.753 kb on - strand, within QEN71_RS35270at 1263.104 kb on + strand, within QEN71_RS35270at 1263.104 kb on + strand, within QEN71_RS35270at 1263.105 kb on - strand, within QEN71_RS35270at 1263.288 kb on + strand, within QEN71_RS35270

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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1,260,699 + +1.8
1,260,845 + -2.6
1,260,857 + +0.4
1,260,858 - -0.3
1,261,234 + QEN71_RS35260 0.83 +0.0
1,261,355 - +0.9
1,261,355 - -1.2
1,261,378 + +0.9
1,261,413 - -1.0
1,261,429 + -0.0
1,261,429 + +1.4
1,261,709 + QEN71_RS35265 0.18 -1.7
1,261,709 + QEN71_RS35265 0.18 -0.4
1,262,001 - QEN71_RS35265 0.56 -1.6
1,262,238 + QEN71_RS35265 0.88 +0.6
1,262,239 - QEN71_RS35265 0.88 -0.1
1,262,345 + +0.4
1,262,346 - -1.6
1,262,533 + +0.0
1,262,533 + -0.2
1,262,534 - -0.1
1,262,668 + QEN71_RS35270 0.15 +0.8
1,262,668 + QEN71_RS35270 0.15 -0.3
1,262,700 - QEN71_RS35270 0.16 -0.3
1,262,705 + QEN71_RS35270 0.17 +0.3
1,262,705 + QEN71_RS35270 0.17 +0.7
1,262,706 - QEN71_RS35270 0.17 +0.7
1,262,750 + QEN71_RS35270 0.19 -1.0
1,262,751 - QEN71_RS35270 0.19 +0.1
1,262,751 - QEN71_RS35270 0.19 +0.5
1,262,753 - QEN71_RS35270 0.19 -0.6
1,262,753 - QEN71_RS35270 0.19 +0.4
1,263,104 + QEN71_RS35270 0.39 +1.1
1,263,104 + QEN71_RS35270 0.39 -0.1
1,263,105 - QEN71_RS35270 0.39 +1.0
1,263,288 + QEN71_RS35270 0.49 -1.6

Or see this region's nucleotide sequence