Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS34670 and QEN71_RS34675 are separated by 172 nucleotides QEN71_RS34675 and QEN71_RS34680 are separated by 389 nucleotides QEN71_RS34680 and QEN71_RS34685 are separated by 450 nucleotides
QEN71_RS34670: QEN71_RS34670 - hypothetical protein, at 1,094,626 to 1,095,330
_RS34670
QEN71_RS34675: QEN71_RS34675 - hypothetical protein, at 1,095,503 to 1,095,550
_RS34675
QEN71_RS34680: QEN71_RS34680 - proline dehydrogenase family protein, at 1,095,940 to 1,096,851
_RS34680
QEN71_RS34685: QEN71_RS34685 - type VI secretion system tip protein TssI/VgrG, at 1,097,302 to 1,099,479
_RS34685
Position (kb)
1095
1096
1097 Strain fitness (log2 ratio)
-2
-1
0
1 at 1094.948 kb on + strand, within QEN71_RS34670 at 1094.974 kb on + strand, within QEN71_RS34670 at 1094.975 kb on - strand, within QEN71_RS34670 at 1094.975 kb on - strand, within QEN71_RS34670 at 1095.054 kb on - strand, within QEN71_RS34670 at 1095.148 kb on + strand, within QEN71_RS34670 at 1095.149 kb on - strand, within QEN71_RS34670 at 1095.348 kb on + strand at 1095.349 kb on - strand at 1095.780 kb on + strand at 1095.781 kb on - strand at 1096.019 kb on - strand at 1096.021 kb on - strand at 1096.100 kb on + strand, within QEN71_RS34680 at 1096.176 kb on - strand, within QEN71_RS34680 at 1096.386 kb on - strand, within QEN71_RS34680 at 1096.779 kb on + strand at 1096.912 kb on + strand at 1096.912 kb on + strand at 1097.114 kb on + strand at 1097.668 kb on + strand, within QEN71_RS34685 at 1097.754 kb on - strand, within QEN71_RS34685 at 1097.776 kb on + strand, within QEN71_RS34685 at 1097.776 kb on + strand, within QEN71_RS34685 at 1097.782 kb on + strand, within QEN71_RS34685
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 1,094,948 + QEN71_RS34670 0.46 -0.0 1,094,974 + QEN71_RS34670 0.49 -0.3 1,094,975 - QEN71_RS34670 0.50 +0.2 1,094,975 - QEN71_RS34670 0.50 -1.2 1,095,054 - QEN71_RS34670 0.61 -2.0 1,095,148 + QEN71_RS34670 0.74 +0.0 1,095,149 - QEN71_RS34670 0.74 -0.5 1,095,348 + +0.9 1,095,349 - +0.4 1,095,780 + -0.3 1,095,781 - -0.4 1,096,019 - -0.3 1,096,021 - -0.6 1,096,100 + QEN71_RS34680 0.18 -0.1 1,096,176 - QEN71_RS34680 0.26 -2.6 1,096,386 - QEN71_RS34680 0.49 +0.4 1,096,779 + -0.4 1,096,912 + -1.1 1,096,912 + -0.6 1,097,114 + -0.3 1,097,668 + QEN71_RS34685 0.17 -0.6 1,097,754 - QEN71_RS34685 0.21 +0.8 1,097,776 + QEN71_RS34685 0.22 -0.3 1,097,776 + QEN71_RS34685 0.22 +0.8 1,097,782 + QEN71_RS34685 0.22 -1.8
Or see this region's nucleotide sequence