Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34680

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34670 and QEN71_RS34675 are separated by 172 nucleotidesQEN71_RS34675 and QEN71_RS34680 are separated by 389 nucleotidesQEN71_RS34680 and QEN71_RS34685 are separated by 450 nucleotides QEN71_RS34670: QEN71_RS34670 - hypothetical protein, at 1,094,626 to 1,095,330 _RS34670 QEN71_RS34675: QEN71_RS34675 - hypothetical protein, at 1,095,503 to 1,095,550 _RS34675 QEN71_RS34680: QEN71_RS34680 - proline dehydrogenase family protein, at 1,095,940 to 1,096,851 _RS34680 QEN71_RS34685: QEN71_RS34685 - type VI secretion system tip protein TssI/VgrG, at 1,097,302 to 1,099,479 _RS34685 Position (kb) 1095 1096 1097Strain fitness (log2 ratio) -2 -1 0 1at 1094.948 kb on + strand, within QEN71_RS34670at 1094.974 kb on + strand, within QEN71_RS34670at 1094.975 kb on - strand, within QEN71_RS34670at 1094.975 kb on - strand, within QEN71_RS34670at 1095.054 kb on - strand, within QEN71_RS34670at 1095.148 kb on + strand, within QEN71_RS34670at 1095.149 kb on - strand, within QEN71_RS34670at 1095.348 kb on + strandat 1095.349 kb on - strandat 1095.780 kb on + strandat 1095.781 kb on - strandat 1096.019 kb on - strandat 1096.021 kb on - strandat 1096.100 kb on + strand, within QEN71_RS34680at 1096.176 kb on - strand, within QEN71_RS34680at 1096.386 kb on - strand, within QEN71_RS34680at 1096.779 kb on + strandat 1096.912 kb on + strandat 1096.912 kb on + strandat 1097.114 kb on + strandat 1097.668 kb on + strand, within QEN71_RS34685at 1097.754 kb on - strand, within QEN71_RS34685at 1097.776 kb on + strand, within QEN71_RS34685at 1097.776 kb on + strand, within QEN71_RS34685at 1097.782 kb on + strand, within QEN71_RS34685

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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1,094,948 + QEN71_RS34670 0.46 -0.0
1,094,974 + QEN71_RS34670 0.49 -0.3
1,094,975 - QEN71_RS34670 0.50 +0.2
1,094,975 - QEN71_RS34670 0.50 -1.2
1,095,054 - QEN71_RS34670 0.61 -2.0
1,095,148 + QEN71_RS34670 0.74 +0.0
1,095,149 - QEN71_RS34670 0.74 -0.5
1,095,348 + +0.9
1,095,349 - +0.4
1,095,780 + -0.3
1,095,781 - -0.4
1,096,019 - -0.3
1,096,021 - -0.6
1,096,100 + QEN71_RS34680 0.18 -0.1
1,096,176 - QEN71_RS34680 0.26 -2.6
1,096,386 - QEN71_RS34680 0.49 +0.4
1,096,779 + -0.4
1,096,912 + -1.1
1,096,912 + -0.6
1,097,114 + -0.3
1,097,668 + QEN71_RS34685 0.17 -0.6
1,097,754 - QEN71_RS34685 0.21 +0.8
1,097,776 + QEN71_RS34685 0.22 -0.3
1,097,776 + QEN71_RS34685 0.22 +0.8
1,097,782 + QEN71_RS34685 0.22 -1.8

Or see this region's nucleotide sequence