Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34445

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34435 and QEN71_RS34440 are separated by 135 nucleotidesQEN71_RS34440 and QEN71_RS34445 overlap by 4 nucleotidesQEN71_RS34445 and QEN71_RS34450 are separated by 14 nucleotides QEN71_RS34435: QEN71_RS34435 - LysR substrate-binding domain-containing protein, at 1,040,633 to 1,041,559 _RS34435 QEN71_RS34440: QEN71_RS34440 - MoaF C-terminal domain-containing protein, at 1,041,695 to 1,042,561 _RS34440 QEN71_RS34445: QEN71_RS34445 - SDR family oxidoreductase, at 1,042,558 to 1,043,361 _RS34445 QEN71_RS34450: QEN71_RS34450 - SDR family oxidoreductase, at 1,043,376 to 1,044,176 _RS34450 Position (kb) 1042 1043 1044Strain fitness (log2 ratio) -2 -1 0 1 2at 1041.760 kb on + strandat 1041.761 kb on - strandat 1041.761 kb on - strandat 1041.829 kb on + strand, within QEN71_RS34440at 1041.829 kb on + strand, within QEN71_RS34440at 1041.830 kb on - strand, within QEN71_RS34440at 1041.950 kb on + strand, within QEN71_RS34440at 1041.950 kb on + strand, within QEN71_RS34440at 1041.950 kb on + strand, within QEN71_RS34440at 1041.950 kb on + strand, within QEN71_RS34440at 1041.950 kb on + strand, within QEN71_RS34440at 1041.951 kb on - strand, within QEN71_RS34440at 1041.962 kb on + strand, within QEN71_RS34440at 1042.244 kb on + strand, within QEN71_RS34440at 1042.245 kb on - strand, within QEN71_RS34440at 1042.250 kb on + strand, within QEN71_RS34440at 1042.250 kb on + strand, within QEN71_RS34440at 1042.250 kb on + strand, within QEN71_RS34440at 1042.250 kb on + strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.252 kb on + strand, within QEN71_RS34440at 1042.252 kb on + strand, within QEN71_RS34440at 1042.276 kb on + strand, within QEN71_RS34440at 1042.276 kb on + strand, within QEN71_RS34440at 1042.276 kb on + strand, within QEN71_RS34440at 1042.276 kb on + strand, within QEN71_RS34440at 1042.277 kb on - strand, within QEN71_RS34440at 1042.277 kb on - strand, within QEN71_RS34440at 1042.277 kb on - strand, within QEN71_RS34440at 1042.277 kb on - strand, within QEN71_RS34440at 1042.277 kb on - strand, within QEN71_RS34440at 1042.280 kb on + strand, within QEN71_RS34440at 1042.280 kb on + strand, within QEN71_RS34440at 1042.280 kb on + strand, within QEN71_RS34440at 1042.281 kb on - strand, within QEN71_RS34440at 1042.299 kb on - strand, within QEN71_RS34440at 1042.383 kb on - strand, within QEN71_RS34440at 1042.383 kb on - strand, within QEN71_RS34440at 1043.257 kb on + strand, within QEN71_RS34445at 1043.258 kb on - strand, within QEN71_RS34445at 1043.282 kb on - strandat 1043.282 kb on - strandat 1043.282 kb on - strandat 1043.282 kb on - strandat 1043.282 kb on - strandat 1043.551 kb on + strand, within QEN71_RS34450at 1043.551 kb on + strand, within QEN71_RS34450at 1043.552 kb on - strand, within QEN71_RS34450at 1043.637 kb on + strand, within QEN71_RS34450at 1043.638 kb on - strand, within QEN71_RS34450at 1043.638 kb on - strand, within QEN71_RS34450at 1043.668 kb on + strand, within QEN71_RS34450at 1043.723 kb on - strand, within QEN71_RS34450at 1043.723 kb on - strand, within QEN71_RS34450at 1043.865 kb on + strand, within QEN71_RS34450at 1043.865 kb on + strand, within QEN71_RS34450at 1043.865 kb on + strand, within QEN71_RS34450at 1043.865 kb on + strand, within QEN71_RS34450at 1043.865 kb on + strand, within QEN71_RS34450at 1043.865 kb on + strand, within QEN71_RS34450at 1043.865 kb on + strand, within QEN71_RS34450at 1043.865 kb on + strand, within QEN71_RS34450at 1043.866 kb on - strand, within QEN71_RS34450at 1043.866 kb on - strand, within QEN71_RS34450at 1043.866 kb on - strand, within QEN71_RS34450at 1044.228 kb on + strandat 1044.229 kb on - strandat 1044.229 kb on - strandat 1044.323 kb on - strandat 1044.323 kb on - strandat 1044.323 kb on - strandat 1044.323 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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1,041,760 + -0.8
1,041,761 - -0.6
1,041,761 - -1.7
1,041,829 + QEN71_RS34440 0.15 -0.6
1,041,829 + QEN71_RS34440 0.15 +1.8
1,041,830 - QEN71_RS34440 0.16 +0.5
1,041,950 + QEN71_RS34440 0.29 +0.5
1,041,950 + QEN71_RS34440 0.29 -0.5
1,041,950 + QEN71_RS34440 0.29 +0.2
1,041,950 + QEN71_RS34440 0.29 -0.7
1,041,950 + QEN71_RS34440 0.29 +0.1
1,041,951 - QEN71_RS34440 0.30 -0.6
1,041,962 + QEN71_RS34440 0.31 -0.6
1,042,244 + QEN71_RS34440 0.63 +0.4
1,042,245 - QEN71_RS34440 0.63 -0.1
1,042,250 + QEN71_RS34440 0.64 -0.0
1,042,250 + QEN71_RS34440 0.64 -0.1
1,042,250 + QEN71_RS34440 0.64 +0.0
1,042,250 + QEN71_RS34440 0.64 -0.6
1,042,251 - QEN71_RS34440 0.64 -0.2
1,042,251 - QEN71_RS34440 0.64 -0.7
1,042,251 - QEN71_RS34440 0.64 +0.6
1,042,251 - QEN71_RS34440 0.64 -0.3
1,042,251 - QEN71_RS34440 0.64 +0.0
1,042,251 - QEN71_RS34440 0.64 -0.8
1,042,252 + QEN71_RS34440 0.64 +0.0
1,042,252 + QEN71_RS34440 0.64 -0.5
1,042,276 + QEN71_RS34440 0.67 +0.1
1,042,276 + QEN71_RS34440 0.67 -0.4
1,042,276 + QEN71_RS34440 0.67 +0.8
1,042,276 + QEN71_RS34440 0.67 -1.0
1,042,277 - QEN71_RS34440 0.67 +0.6
1,042,277 - QEN71_RS34440 0.67 -0.3
1,042,277 - QEN71_RS34440 0.67 -0.6
1,042,277 - QEN71_RS34440 0.67 -0.6
1,042,277 - QEN71_RS34440 0.67 -0.3
1,042,280 + QEN71_RS34440 0.67 +0.4
1,042,280 + QEN71_RS34440 0.67 -1.8
1,042,280 + QEN71_RS34440 0.67 +0.1
1,042,281 - QEN71_RS34440 0.68 -1.2
1,042,299 - QEN71_RS34440 0.70 -0.7
1,042,383 - QEN71_RS34440 0.79 +1.5
1,042,383 - QEN71_RS34440 0.79 +0.1
1,043,257 + QEN71_RS34445 0.87 -0.3
1,043,258 - QEN71_RS34445 0.87 -0.9
1,043,282 - -0.8
1,043,282 - -0.4
1,043,282 - +0.8
1,043,282 - -2.6
1,043,282 - +0.2
1,043,551 + QEN71_RS34450 0.22 -0.3
1,043,551 + QEN71_RS34450 0.22 +1.4
1,043,552 - QEN71_RS34450 0.22 +0.7
1,043,637 + QEN71_RS34450 0.33 -0.3
1,043,638 - QEN71_RS34450 0.33 -0.4
1,043,638 - QEN71_RS34450 0.33 +0.6
1,043,668 + QEN71_RS34450 0.36 -0.4
1,043,723 - QEN71_RS34450 0.43 +0.1
1,043,723 - QEN71_RS34450 0.43 -0.1
1,043,865 + QEN71_RS34450 0.61 -0.7
1,043,865 + QEN71_RS34450 0.61 +0.9
1,043,865 + QEN71_RS34450 0.61 -0.5
1,043,865 + QEN71_RS34450 0.61 +0.7
1,043,865 + QEN71_RS34450 0.61 +0.4
1,043,865 + QEN71_RS34450 0.61 +0.4
1,043,865 + QEN71_RS34450 0.61 -0.1
1,043,865 + QEN71_RS34450 0.61 +0.9
1,043,866 - QEN71_RS34450 0.61 -1.0
1,043,866 - QEN71_RS34450 0.61 +0.4
1,043,866 - QEN71_RS34450 0.61 -0.7
1,044,228 + -0.3
1,044,229 - -0.8
1,044,229 - -0.6
1,044,323 - -0.8
1,044,323 - +0.1
1,044,323 - +1.0
1,044,323 - +0.1

Or see this region's nucleotide sequence