Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34435

Experiment: Filtered_supernatant_MT81_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS34430 and QEN71_RS34435 are separated by 264 nucleotidesQEN71_RS34435 and QEN71_RS34440 are separated by 135 nucleotides QEN71_RS34430: QEN71_RS34430 - MFS transporter, at 1,039,055 to 1,040,368 _RS34430 QEN71_RS34435: QEN71_RS34435 - LysR substrate-binding domain-containing protein, at 1,040,633 to 1,041,559 _RS34435 QEN71_RS34440: QEN71_RS34440 - MoaF C-terminal domain-containing protein, at 1,041,695 to 1,042,561 _RS34440 QEN71_RS34445: QEN71_RS34445 - SDR family oxidoreductase, at 1,042,558 to 1,043,361 _RS34445 Position (kb) 1040 1041 1042Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1039.722 kb on + strand, within QEN71_RS34430at 1039.723 kb on - strand, within QEN71_RS34430at 1040.014 kb on - strand, within QEN71_RS34430at 1040.238 kb on + strandat 1040.432 kb on + strandat 1040.433 kb on - strandat 1040.482 kb on - strandat 1040.482 kb on - strandat 1040.563 kb on - strandat 1040.594 kb on + strandat 1040.595 kb on - strandat 1040.605 kb on - strandat 1040.650 kb on - strandat 1041.342 kb on - strand, within QEN71_RS34435at 1041.760 kb on + strandat 1041.761 kb on - strandat 1041.761 kb on - strandat 1041.829 kb on + strand, within QEN71_RS34440at 1041.829 kb on + strand, within QEN71_RS34440at 1041.830 kb on - strand, within QEN71_RS34440at 1041.950 kb on + strand, within QEN71_RS34440at 1041.950 kb on + strand, within QEN71_RS34440at 1041.950 kb on + strand, within QEN71_RS34440at 1041.950 kb on + strand, within QEN71_RS34440at 1041.950 kb on + strand, within QEN71_RS34440at 1041.951 kb on - strand, within QEN71_RS34440at 1041.962 kb on + strand, within QEN71_RS34440at 1042.244 kb on + strand, within QEN71_RS34440at 1042.245 kb on - strand, within QEN71_RS34440at 1042.250 kb on + strand, within QEN71_RS34440at 1042.250 kb on + strand, within QEN71_RS34440at 1042.250 kb on + strand, within QEN71_RS34440at 1042.250 kb on + strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.251 kb on - strand, within QEN71_RS34440at 1042.252 kb on + strand, within QEN71_RS34440at 1042.252 kb on + strand, within QEN71_RS34440at 1042.276 kb on + strand, within QEN71_RS34440at 1042.276 kb on + strand, within QEN71_RS34440at 1042.276 kb on + strand, within QEN71_RS34440at 1042.276 kb on + strand, within QEN71_RS34440at 1042.277 kb on - strand, within QEN71_RS34440at 1042.277 kb on - strand, within QEN71_RS34440at 1042.277 kb on - strand, within QEN71_RS34440at 1042.277 kb on - strand, within QEN71_RS34440at 1042.277 kb on - strand, within QEN71_RS34440at 1042.280 kb on + strand, within QEN71_RS34440at 1042.280 kb on + strand, within QEN71_RS34440at 1042.280 kb on + strand, within QEN71_RS34440at 1042.281 kb on - strand, within QEN71_RS34440at 1042.299 kb on - strand, within QEN71_RS34440at 1042.383 kb on - strand, within QEN71_RS34440at 1042.383 kb on - strand, within QEN71_RS34440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
remove
1,039,722 + QEN71_RS34430 0.51 -0.6
1,039,723 - QEN71_RS34430 0.51 -2.8
1,040,014 - QEN71_RS34430 0.73 -0.7
1,040,238 + +0.4
1,040,432 + +0.4
1,040,433 - +0.4
1,040,482 - -2.3
1,040,482 - -0.4
1,040,563 - -2.9
1,040,594 + +0.1
1,040,595 - +0.1
1,040,605 - +0.0
1,040,650 - +1.2
1,041,342 - QEN71_RS34435 0.76 -1.0
1,041,760 + -0.8
1,041,761 - -0.6
1,041,761 - -1.7
1,041,829 + QEN71_RS34440 0.15 -0.6
1,041,829 + QEN71_RS34440 0.15 +1.8
1,041,830 - QEN71_RS34440 0.16 +0.5
1,041,950 + QEN71_RS34440 0.29 +0.5
1,041,950 + QEN71_RS34440 0.29 -0.5
1,041,950 + QEN71_RS34440 0.29 +0.2
1,041,950 + QEN71_RS34440 0.29 -0.7
1,041,950 + QEN71_RS34440 0.29 +0.1
1,041,951 - QEN71_RS34440 0.30 -0.6
1,041,962 + QEN71_RS34440 0.31 -0.6
1,042,244 + QEN71_RS34440 0.63 +0.4
1,042,245 - QEN71_RS34440 0.63 -0.1
1,042,250 + QEN71_RS34440 0.64 -0.0
1,042,250 + QEN71_RS34440 0.64 -0.1
1,042,250 + QEN71_RS34440 0.64 +0.0
1,042,250 + QEN71_RS34440 0.64 -0.6
1,042,251 - QEN71_RS34440 0.64 -0.2
1,042,251 - QEN71_RS34440 0.64 -0.7
1,042,251 - QEN71_RS34440 0.64 +0.6
1,042,251 - QEN71_RS34440 0.64 -0.3
1,042,251 - QEN71_RS34440 0.64 +0.0
1,042,251 - QEN71_RS34440 0.64 -0.8
1,042,252 + QEN71_RS34440 0.64 +0.0
1,042,252 + QEN71_RS34440 0.64 -0.5
1,042,276 + QEN71_RS34440 0.67 +0.1
1,042,276 + QEN71_RS34440 0.67 -0.4
1,042,276 + QEN71_RS34440 0.67 +0.8
1,042,276 + QEN71_RS34440 0.67 -1.0
1,042,277 - QEN71_RS34440 0.67 +0.6
1,042,277 - QEN71_RS34440 0.67 -0.3
1,042,277 - QEN71_RS34440 0.67 -0.6
1,042,277 - QEN71_RS34440 0.67 -0.6
1,042,277 - QEN71_RS34440 0.67 -0.3
1,042,280 + QEN71_RS34440 0.67 +0.4
1,042,280 + QEN71_RS34440 0.67 -1.8
1,042,280 + QEN71_RS34440 0.67 +0.1
1,042,281 - QEN71_RS34440 0.68 -1.2
1,042,299 - QEN71_RS34440 0.70 -0.7
1,042,383 - QEN71_RS34440 0.79 +1.5
1,042,383 - QEN71_RS34440 0.79 +0.1

Or see this region's nucleotide sequence