Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34095

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34090 and QEN71_RS34095 overlap by 26 nucleotidesQEN71_RS34095 and QEN71_RS34100 are separated by 7 nucleotidesQEN71_RS34100 and QEN71_RS34105 are separated by 23 nucleotides QEN71_RS34090: QEN71_RS34090 - methenyltetrahydromethanopterin cyclohydrolase, at 963,774 to 964,802 _RS34090 QEN71_RS34095: QEN71_RS34095 - ATP-grasp domain-containing protein, at 964,777 to 965,961 _RS34095 QEN71_RS34100: QEN71_RS34100 - methylenetetrahydromethanopterin dehydrogenase, at 965,969 to 966,889 _RS34100 QEN71_RS34105: QEN71_RS34105 - beta-ribofuranosylaminobenzene 5'-phosphate synthase, at 966,913 to 967,932 _RS34105 Position (kb) 964 965 966Strain fitness (log2 ratio) -1 0 1at 963.902 kb on - strand, within QEN71_RS34090at 963.902 kb on - strand, within QEN71_RS34090at 965.005 kb on + strand, within QEN71_RS34095at 965.058 kb on + strand, within QEN71_RS34095at 965.574 kb on + strand, within QEN71_RS34095at 965.575 kb on - strand, within QEN71_RS34095at 966.043 kb on - strandat 966.043 kb on - strandat 966.096 kb on + strand, within QEN71_RS34100at 966.096 kb on + strand, within QEN71_RS34100at 966.097 kb on - strand, within QEN71_RS34100at 966.722 kb on - strand, within QEN71_RS34100at 966.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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963,902 - QEN71_RS34090 0.12 -0.6
963,902 - QEN71_RS34090 0.12 +0.3
965,005 + QEN71_RS34095 0.19 -0.6
965,058 + QEN71_RS34095 0.24 -1.0
965,574 + QEN71_RS34095 0.67 -0.1
965,575 - QEN71_RS34095 0.67 -0.6
966,043 - -0.5
966,043 - -0.2
966,096 + QEN71_RS34100 0.14 +0.1
966,096 + QEN71_RS34100 0.14 +0.0
966,097 - QEN71_RS34100 0.14 -1.3
966,722 - QEN71_RS34100 0.82 -0.8
966,901 - -1.0

Or see this region's nucleotide sequence