Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33810 and QEN71_RS33815 overlap by 4 nucleotides QEN71_RS33815 and QEN71_RS33820 are separated by 72 nucleotides
QEN71_RS33810: QEN71_RS33810 - dicarboxylate/amino acid:cation symporter, at 904,684 to 905,964
_RS33810
QEN71_RS33815: QEN71_RS33815 - amino acid racemase, at 905,961 to 907,460
_RS33815
QEN71_RS33820: QEN71_RS33820 - aspartate ammonia-lyase, at 907,533 to 908,981
_RS33820
Position (kb) 905
906
907
908 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 905.266 kb on + strand, within QEN71_RS33810 at 905.266 kb on + strand, within QEN71_RS33810 at 905.266 kb on + strand, within QEN71_RS33810 at 905.267 kb on - strand, within QEN71_RS33810 at 905.267 kb on - strand, within QEN71_RS33810 at 905.267 kb on - strand, within QEN71_RS33810 at 905.345 kb on - strand, within QEN71_RS33810 at 905.345 kb on - strand, within QEN71_RS33810 at 905.351 kb on - strand, within QEN71_RS33810 at 905.374 kb on + strand, within QEN71_RS33810 at 905.523 kb on + strand, within QEN71_RS33810 at 905.524 kb on - strand, within QEN71_RS33810 at 905.588 kb on - strand, within QEN71_RS33810 at 906.162 kb on + strand, within QEN71_RS33815 at 906.163 kb on - strand, within QEN71_RS33815 at 906.163 kb on - strand, within QEN71_RS33815 at 906.164 kb on + strand, within QEN71_RS33815 at 906.237 kb on - strand, within QEN71_RS33815 at 906.285 kb on - strand, within QEN71_RS33815 at 906.768 kb on - strand, within QEN71_RS33815 at 906.882 kb on + strand, within QEN71_RS33815 at 906.975 kb on + strand, within QEN71_RS33815 at 907.020 kb on + strand, within QEN71_RS33815 at 907.021 kb on - strand, within QEN71_RS33815 at 907.093 kb on + strand, within QEN71_RS33815 at 907.177 kb on - strand, within QEN71_RS33815 at 907.323 kb on + strand at 907.389 kb on - strand at 907.504 kb on + strand at 907.504 kb on + strand at 907.530 kb on + strand at 907.531 kb on - strand at 907.531 kb on - strand at 907.531 kb on - strand at 907.609 kb on - strand at 907.609 kb on - strand at 907.611 kb on + strand at 907.612 kb on - strand at 908.011 kb on - strand, within QEN71_RS33820 at 908.011 kb on - strand, within QEN71_RS33820 at 908.324 kb on + strand, within QEN71_RS33820
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 905,266 + QEN71_RS33810 0.45 +0.4 905,266 + QEN71_RS33810 0.45 +0.0 905,266 + QEN71_RS33810 0.45 -0.3 905,267 - QEN71_RS33810 0.46 +0.6 905,267 - QEN71_RS33810 0.46 -0.2 905,267 - QEN71_RS33810 0.46 -0.0 905,345 - QEN71_RS33810 0.52 +1.4 905,345 - QEN71_RS33810 0.52 +1.0 905,351 - QEN71_RS33810 0.52 -0.6 905,374 + QEN71_RS33810 0.54 +0.0 905,523 + QEN71_RS33810 0.65 -1.6 905,524 - QEN71_RS33810 0.66 -0.5 905,588 - QEN71_RS33810 0.71 -1.0 906,162 + QEN71_RS33815 0.13 -2.5 906,163 - QEN71_RS33815 0.13 -1.8 906,163 - QEN71_RS33815 0.13 -1.3 906,164 + QEN71_RS33815 0.14 -1.4 906,237 - QEN71_RS33815 0.18 -0.9 906,285 - QEN71_RS33815 0.22 -1.3 906,768 - QEN71_RS33815 0.54 -1.0 906,882 + QEN71_RS33815 0.61 +0.9 906,975 + QEN71_RS33815 0.68 +0.4 907,020 + QEN71_RS33815 0.71 +0.0 907,021 - QEN71_RS33815 0.71 -1.4 907,093 + QEN71_RS33815 0.75 -0.7 907,177 - QEN71_RS33815 0.81 -2.0 907,323 + +0.9 907,389 - -0.4 907,504 + -0.0 907,504 + -0.3 907,530 + +0.8 907,531 - +0.6 907,531 - -0.4 907,531 - -3.6 907,609 - +1.5 907,609 - -0.5 907,611 + +0.7 907,612 - +1.2 908,011 - QEN71_RS33820 0.33 -1.6 908,011 - QEN71_RS33820 0.33 +0.1 908,324 + QEN71_RS33820 0.55 +0.4
Or see this region's nucleotide sequence