Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS33735

Experiment: Filtered_supernatant_MT81_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS33730 and QEN71_RS33735 are separated by 34 nucleotidesQEN71_RS33735 and QEN71_RS33740 are separated by 120 nucleotides QEN71_RS33730: QEN71_RS33730 - LysR family transcriptional regulator, at 888,916 to 889,800 _RS33730 QEN71_RS33735: QEN71_RS33735 - SDR family oxidoreductase, at 889,835 to 890,560 _RS33735 QEN71_RS33740: QEN71_RS33740 - LysR family transcriptional regulator, at 890,681 to 891,613 _RS33740 Position (kb) 889 890 891Strain fitness (log2 ratio) -2 -1 0 1 2at 888.837 kb on - strandat 888.837 kb on - strandat 889.464 kb on + strand, within QEN71_RS33730at 889.465 kb on - strand, within QEN71_RS33730at 889.589 kb on - strand, within QEN71_RS33730at 889.767 kb on - strandat 889.798 kb on + strandat 890.085 kb on - strand, within QEN71_RS33735at 890.085 kb on - strand, within QEN71_RS33735at 890.580 kb on + strandat 890.638 kb on + strandat 890.946 kb on + strand, within QEN71_RS33740at 891.139 kb on - strand, within QEN71_RS33740at 891.404 kb on - strand, within QEN71_RS33740

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
remove
888,837 - -1.1
888,837 - +1.9
889,464 + QEN71_RS33730 0.62 -0.6
889,465 - QEN71_RS33730 0.62 +0.0
889,589 - QEN71_RS33730 0.76 +0.7
889,767 - -0.6
889,798 + +0.1
890,085 - QEN71_RS33735 0.34 -0.8
890,085 - QEN71_RS33735 0.34 -2.0
890,580 + +2.6
890,638 + +0.0
890,946 + QEN71_RS33740 0.28 -0.2
891,139 - QEN71_RS33740 0.49 +0.4
891,404 - QEN71_RS33740 0.77 -0.0

Or see this region's nucleotide sequence