Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32930 and QEN71_RS32935 are separated by 411 nucleotides QEN71_RS32935 and QEN71_RS32940 are separated by 42 nucleotides
QEN71_RS32930: QEN71_RS32930 - CGNR zinc finger domain-containing protein, at 717,815 to 718,447
_RS32930
QEN71_RS32935: QEN71_RS32935 - type 1 glutamine amidotransferase domain-containing protein, at 718,859 to 719,536
_RS32935
QEN71_RS32940: QEN71_RS32940 - enoyl-CoA hydratase/isomerase family protein, at 719,579 to 720,415
_RS32940
Position (kb)
718
719
720 Strain fitness (log2 ratio)
-1
0
1
2 at 718.064 kb on + strand, within QEN71_RS32930 at 718.458 kb on + strand at 718.687 kb on + strand at 718.687 kb on + strand at 718.687 kb on + strand at 718.687 kb on + strand at 718.688 kb on - strand at 718.688 kb on - strand at 718.688 kb on - strand at 718.691 kb on + strand at 718.692 kb on - strand at 718.751 kb on + strand at 718.752 kb on - strand at 718.756 kb on - strand at 718.875 kb on + strand at 718.875 kb on + strand at 718.876 kb on - strand at 718.953 kb on - strand, within QEN71_RS32935 at 719.225 kb on + strand, within QEN71_RS32935 at 719.332 kb on + strand, within QEN71_RS32935 at 719.575 kb on - strand at 719.633 kb on + strand at 720.126 kb on - strand, within QEN71_RS32940 at 720.171 kb on - strand, within QEN71_RS32940 at 720.171 kb on - strand, within QEN71_RS32940 at 720.227 kb on - strand, within QEN71_RS32940 at 720.390 kb on - strand at 720.392 kb on + strand at 720.497 kb on - strand at 720.497 kb on - strand at 720.497 kb on - strand at 720.500 kb on + strand at 720.521 kb on + strand at 720.522 kb on - strand at 720.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 718,064 + QEN71_RS32930 0.39 +0.4 718,458 + -0.7 718,687 + -0.3 718,687 + +0.3 718,687 + +0.3 718,687 + +0.7 718,688 - -0.4 718,688 - -0.0 718,688 - -0.3 718,691 + -0.5 718,692 - -1.4 718,751 + -1.1 718,752 - +0.0 718,756 - +0.1 718,875 + +0.0 718,875 + +0.8 718,876 - +2.0 718,953 - QEN71_RS32935 0.14 -1.1 719,225 + QEN71_RS32935 0.54 +0.1 719,332 + QEN71_RS32935 0.70 -1.6 719,575 - +0.3 719,633 + +0.3 720,126 - QEN71_RS32940 0.65 -0.3 720,171 - QEN71_RS32940 0.71 -0.8 720,171 - QEN71_RS32940 0.71 +1.6 720,227 - QEN71_RS32940 0.77 +1.4 720,390 - +0.1 720,392 + +0.4 720,497 - +0.6 720,497 - +0.5 720,497 - -0.6 720,500 + +0.8 720,521 + +1.0 720,522 - +0.7 720,522 - +0.2
Or see this region's nucleotide sequence