Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS32935

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS32930 and QEN71_RS32935 are separated by 411 nucleotidesQEN71_RS32935 and QEN71_RS32940 are separated by 42 nucleotides QEN71_RS32930: QEN71_RS32930 - CGNR zinc finger domain-containing protein, at 717,815 to 718,447 _RS32930 QEN71_RS32935: QEN71_RS32935 - type 1 glutamine amidotransferase domain-containing protein, at 718,859 to 719,536 _RS32935 QEN71_RS32940: QEN71_RS32940 - enoyl-CoA hydratase/isomerase family protein, at 719,579 to 720,415 _RS32940 Position (kb) 718 719 720Strain fitness (log2 ratio) -1 0 1 2at 718.064 kb on + strand, within QEN71_RS32930at 718.458 kb on + strandat 718.687 kb on + strandat 718.687 kb on + strandat 718.687 kb on + strandat 718.687 kb on + strandat 718.688 kb on - strandat 718.688 kb on - strandat 718.688 kb on - strandat 718.691 kb on + strandat 718.692 kb on - strandat 718.751 kb on + strandat 718.752 kb on - strandat 718.756 kb on - strandat 718.875 kb on + strandat 718.875 kb on + strandat 718.876 kb on - strandat 718.953 kb on - strand, within QEN71_RS32935at 719.225 kb on + strand, within QEN71_RS32935at 719.332 kb on + strand, within QEN71_RS32935at 719.575 kb on - strandat 719.633 kb on + strandat 720.126 kb on - strand, within QEN71_RS32940at 720.171 kb on - strand, within QEN71_RS32940at 720.171 kb on - strand, within QEN71_RS32940at 720.227 kb on - strand, within QEN71_RS32940at 720.390 kb on - strandat 720.392 kb on + strandat 720.497 kb on - strandat 720.497 kb on - strandat 720.497 kb on - strandat 720.500 kb on + strandat 720.521 kb on + strandat 720.522 kb on - strandat 720.522 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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718,064 + QEN71_RS32930 0.39 +0.4
718,458 + -0.7
718,687 + -0.3
718,687 + +0.3
718,687 + +0.3
718,687 + +0.7
718,688 - -0.4
718,688 - -0.0
718,688 - -0.3
718,691 + -0.5
718,692 - -1.4
718,751 + -1.1
718,752 - +0.0
718,756 - +0.1
718,875 + +0.0
718,875 + +0.8
718,876 - +2.0
718,953 - QEN71_RS32935 0.14 -1.1
719,225 + QEN71_RS32935 0.54 +0.1
719,332 + QEN71_RS32935 0.70 -1.6
719,575 - +0.3
719,633 + +0.3
720,126 - QEN71_RS32940 0.65 -0.3
720,171 - QEN71_RS32940 0.71 -0.8
720,171 - QEN71_RS32940 0.71 +1.6
720,227 - QEN71_RS32940 0.77 +1.4
720,390 - +0.1
720,392 + +0.4
720,497 - +0.6
720,497 - +0.5
720,497 - -0.6
720,500 + +0.8
720,521 + +1.0
720,522 - +0.7
720,522 - +0.2

Or see this region's nucleotide sequence