Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31845

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS31840 and QEN71_RS31845 are separated by 212 nucleotidesQEN71_RS31845 and QEN71_RS31850 are separated by 21 nucleotidesQEN71_RS31850 and QEN71_RS31855 are separated by 184 nucleotides QEN71_RS31840: QEN71_RS31840 - glucosidase, at 494,673 to 497,417 _RS31840 QEN71_RS31845: QEN71_RS31845 - pseudouridine-5'-phosphate glycosidase, at 497,630 to 498,556 _RS31845 QEN71_RS31850: QEN71_RS31850 - molybdopterin-dependent oxidoreductase, at 498,578 to 499,174 _RS31850 QEN71_RS31855: QEN71_RS31855 - cupin domain-containing protein, at 499,359 to 499,772 _RS31855 Position (kb) 497 498 499Strain fitness (log2 ratio) -2 -1 0 1at 496.778 kb on + strand, within QEN71_RS31840at 496.879 kb on + strand, within QEN71_RS31840at 496.879 kb on + strand, within QEN71_RS31840at 497.012 kb on - strand, within QEN71_RS31840at 497.017 kb on + strand, within QEN71_RS31840at 497.017 kb on + strand, within QEN71_RS31840at 497.017 kb on + strand, within QEN71_RS31840at 497.018 kb on - strand, within QEN71_RS31840at 497.032 kb on + strand, within QEN71_RS31840at 497.032 kb on + strand, within QEN71_RS31840at 497.032 kb on + strand, within QEN71_RS31840at 497.065 kb on + strand, within QEN71_RS31840at 497.065 kb on + strand, within QEN71_RS31840at 497.065 kb on + strand, within QEN71_RS31840at 497.065 kb on + strand, within QEN71_RS31840at 497.066 kb on - strand, within QEN71_RS31840at 497.224 kb on + strandat 497.224 kb on + strandat 497.225 kb on - strandat 497.225 kb on - strandat 497.225 kb on - strandat 497.257 kb on + strandat 497.275 kb on + strandat 497.276 kb on - strandat 497.323 kb on + strandat 497.518 kb on + strandat 497.518 kb on + strandat 497.518 kb on + strandat 497.578 kb on - strandat 497.595 kb on + strandat 497.595 kb on + strandat 497.595 kb on + strandat 497.596 kb on - strandat 497.596 kb on - strandat 497.596 kb on - strandat 498.212 kb on + strand, within QEN71_RS31845at 498.212 kb on + strand, within QEN71_RS31845at 498.212 kb on + strand, within QEN71_RS31845at 498.213 kb on - strand, within QEN71_RS31845at 498.213 kb on - strand, within QEN71_RS31845at 498.213 kb on - strand, within QEN71_RS31845at 498.554 kb on + strandat 498.579 kb on + strandat 498.579 kb on + strandat 498.579 kb on + strandat 498.590 kb on + strandat 498.591 kb on - strandat 498.591 kb on - strandat 498.678 kb on + strand, within QEN71_RS31850at 498.679 kb on - strand, within QEN71_RS31850at 498.679 kb on - strand, within QEN71_RS31850at 498.690 kb on - strand, within QEN71_RS31850at 498.820 kb on + strand, within QEN71_RS31850at 498.821 kb on - strand, within QEN71_RS31850at 498.821 kb on - strand, within QEN71_RS31850at 498.854 kb on + strand, within QEN71_RS31850at 498.855 kb on - strand, within QEN71_RS31850at 498.855 kb on - strand, within QEN71_RS31850at 498.878 kb on + strand, within QEN71_RS31850at 498.901 kb on - strand, within QEN71_RS31850at 498.901 kb on - strand, within QEN71_RS31850at 498.998 kb on + strand, within QEN71_RS31850at 498.999 kb on - strand, within QEN71_RS31850at 498.999 kb on - strand, within QEN71_RS31850at 499.193 kb on + strandat 499.193 kb on + strandat 499.204 kb on + strandat 499.205 kb on - strandat 499.215 kb on + strandat 499.216 kb on - strandat 499.216 kb on - strandat 499.218 kb on - strandat 499.218 kb on - strandat 499.218 kb on - strandat 499.233 kb on - strandat 499.314 kb on - strandat 499.358 kb on + strandat 499.359 kb on - strandat 499.359 kb on - strandat 499.443 kb on + strand, within QEN71_RS31855at 499.444 kb on - strand, within QEN71_RS31855

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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496,778 + QEN71_RS31840 0.77 -0.0
496,879 + QEN71_RS31840 0.80 +0.1
496,879 + QEN71_RS31840 0.80 -0.6
497,012 - QEN71_RS31840 0.85 -0.1
497,017 + QEN71_RS31840 0.85 -0.7
497,017 + QEN71_RS31840 0.85 +0.5
497,017 + QEN71_RS31840 0.85 +0.4
497,018 - QEN71_RS31840 0.85 -1.2
497,032 + QEN71_RS31840 0.86 +0.1
497,032 + QEN71_RS31840 0.86 -0.6
497,032 + QEN71_RS31840 0.86 +0.2
497,065 + QEN71_RS31840 0.87 -1.9
497,065 + QEN71_RS31840 0.87 -0.1
497,065 + QEN71_RS31840 0.87 +0.5
497,065 + QEN71_RS31840 0.87 -0.2
497,066 - QEN71_RS31840 0.87 -1.1
497,224 + -0.0
497,224 + -0.0
497,225 - -0.5
497,225 - +0.2
497,225 - -0.1
497,257 + -0.0
497,275 + +0.1
497,276 - +0.4
497,323 + +0.1
497,518 + +1.2
497,518 + -0.8
497,518 + -2.5
497,578 - -0.2
497,595 + +0.0
497,595 + -1.3
497,595 + +1.0
497,596 - -0.4
497,596 - -0.6
497,596 - +1.0
498,212 + QEN71_RS31845 0.63 -0.6
498,212 + QEN71_RS31845 0.63 -1.1
498,212 + QEN71_RS31845 0.63 -2.0
498,213 - QEN71_RS31845 0.63 +0.3
498,213 - QEN71_RS31845 0.63 -2.1
498,213 - QEN71_RS31845 0.63 +0.2
498,554 + +1.1
498,579 + -1.2
498,579 + -1.4
498,579 + -0.7
498,590 + +0.8
498,591 - -1.0
498,591 - +0.7
498,678 + QEN71_RS31850 0.17 -0.1
498,679 - QEN71_RS31850 0.17 +0.3
498,679 - QEN71_RS31850 0.17 -0.0
498,690 - QEN71_RS31850 0.19 +0.9
498,820 + QEN71_RS31850 0.41 -0.2
498,821 - QEN71_RS31850 0.41 +0.3
498,821 - QEN71_RS31850 0.41 -1.7
498,854 + QEN71_RS31850 0.46 -1.2
498,855 - QEN71_RS31850 0.46 +0.6
498,855 - QEN71_RS31850 0.46 +0.1
498,878 + QEN71_RS31850 0.50 +0.4
498,901 - QEN71_RS31850 0.54 -0.6
498,901 - QEN71_RS31850 0.54 +1.2
498,998 + QEN71_RS31850 0.70 +0.5
498,999 - QEN71_RS31850 0.71 -0.0
498,999 - QEN71_RS31850 0.71 -0.3
499,193 + +0.6
499,193 + -1.1
499,204 + +0.8
499,205 - -0.0
499,215 + +0.4
499,216 - -0.5
499,216 - +0.1
499,218 - +0.7
499,218 - +0.1
499,218 - -1.5
499,233 - -0.4
499,314 - +1.0
499,358 + -0.5
499,359 - -0.5
499,359 - +0.1
499,443 + QEN71_RS31855 0.20 +0.8
499,444 - QEN71_RS31855 0.21 -0.6

Or see this region's nucleotide sequence