Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31820 and QEN71_RS31825 are separated by 68 nucleotides QEN71_RS31825 and QEN71_RS31830 are separated by 380 nucleotides QEN71_RS31830 and QEN71_RS31835 are separated by 80 nucleotides QEN71_RS31835 and QEN71_RS31840 are separated by 77 nucleotides
QEN71_RS31820: QEN71_RS31820 - malate synthase G, at 489,913 to 492,093
_RS31820
QEN71_RS31825: QEN71_RS31825 - heme-binding protein, at 492,162 to 492,578
_RS31825
QEN71_RS31830: QEN71_RS31830 - helix-turn-helix domain-containing GNAT family N-acetyltransferase, at 492,959 to 493,963
_RS31830
QEN71_RS31835: QEN71_RS31835 - thioredoxin family protein, at 494,044 to 494,595
_RS31835
QEN71_RS31840: QEN71_RS31840 - glucosidase, at 494,673 to 497,417
_RS31840
Position (kb) 492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 492.136 kb on + strand at 492.270 kb on + strand, within QEN71_RS31825 at 492.356 kb on - strand, within QEN71_RS31825 at 492.412 kb on + strand, within QEN71_RS31825 at 492.412 kb on + strand, within QEN71_RS31825 at 492.412 kb on + strand, within QEN71_RS31825 at 492.413 kb on - strand, within QEN71_RS31825 at 492.413 kb on - strand, within QEN71_RS31825 at 492.697 kb on + strand at 492.697 kb on + strand at 492.697 kb on + strand at 492.699 kb on + strand at 492.700 kb on - strand at 492.700 kb on - strand at 492.700 kb on - strand at 492.701 kb on + strand at 492.702 kb on - strand at 492.702 kb on - strand at 492.782 kb on + strand at 492.782 kb on + strand at 492.783 kb on - strand at 492.786 kb on + strand at 492.786 kb on + strand at 492.786 kb on + strand at 492.786 kb on + strand at 492.787 kb on - strand at 492.787 kb on - strand at 492.787 kb on - strand at 492.787 kb on - strand at 492.787 kb on - strand at 492.852 kb on + strand at 492.852 kb on + strand at 492.853 kb on - strand at 492.853 kb on - strand at 493.036 kb on + strand at 493.089 kb on + strand, within QEN71_RS31830 at 493.089 kb on + strand, within QEN71_RS31830 at 493.089 kb on + strand, within QEN71_RS31830 at 493.090 kb on - strand, within QEN71_RS31830 at 493.090 kb on - strand, within QEN71_RS31830 at 493.090 kb on - strand, within QEN71_RS31830 at 493.090 kb on - strand, within QEN71_RS31830 at 493.131 kb on + strand, within QEN71_RS31830 at 493.132 kb on - strand, within QEN71_RS31830 at 493.132 kb on - strand, within QEN71_RS31830 at 493.132 kb on - strand, within QEN71_RS31830 at 493.132 kb on - strand, within QEN71_RS31830 at 493.133 kb on - strand, within QEN71_RS31830 at 493.210 kb on + strand, within QEN71_RS31830 at 493.381 kb on - strand, within QEN71_RS31830 at 493.408 kb on - strand, within QEN71_RS31830 at 493.411 kb on - strand, within QEN71_RS31830 at 493.421 kb on + strand, within QEN71_RS31830 at 493.422 kb on - strand, within QEN71_RS31830 at 493.456 kb on - strand, within QEN71_RS31830 at 493.533 kb on + strand, within QEN71_RS31830 at 493.536 kb on - strand, within QEN71_RS31830 at 493.659 kb on + strand, within QEN71_RS31830 at 493.659 kb on + strand, within QEN71_RS31830 at 493.659 kb on + strand, within QEN71_RS31830 at 493.660 kb on - strand, within QEN71_RS31830 at 493.984 kb on + strand at 494.002 kb on + strand at 494.007 kb on + strand at 494.008 kb on - strand at 494.225 kb on + strand, within QEN71_RS31835 at 494.288 kb on + strand, within QEN71_RS31835 at 494.450 kb on + strand, within QEN71_RS31835 at 494.451 kb on - strand, within QEN71_RS31835 at 494.515 kb on - strand, within QEN71_RS31835 at 494.515 kb on - strand, within QEN71_RS31835 at 494.516 kb on + strand, within QEN71_RS31835 at 494.517 kb on - strand, within QEN71_RS31835 at 494.544 kb on + strand at 494.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 492,136 + -0.5 492,270 + QEN71_RS31825 0.26 +0.3 492,356 - QEN71_RS31825 0.47 +0.1 492,412 + QEN71_RS31825 0.60 -2.0 492,412 + QEN71_RS31825 0.60 +0.3 492,412 + QEN71_RS31825 0.60 +0.2 492,413 - QEN71_RS31825 0.60 +0.9 492,413 - QEN71_RS31825 0.60 +0.7 492,697 + -0.0 492,697 + -1.4 492,697 + -0.0 492,699 + -0.5 492,700 - -0.2 492,700 - +0.3 492,700 - -1.0 492,701 + -2.3 492,702 - -0.1 492,702 - -1.5 492,782 + +0.4 492,782 + +0.6 492,783 - +1.6 492,786 + +0.2 492,786 + -0.3 492,786 + -1.9 492,786 + -0.3 492,787 - -0.2 492,787 - -0.5 492,787 - +0.4 492,787 - -0.6 492,787 - +0.3 492,852 + +1.6 492,852 + +0.9 492,853 - -0.5 492,853 - -0.6 493,036 + -0.5 493,089 + QEN71_RS31830 0.13 +2.6 493,089 + QEN71_RS31830 0.13 -0.6 493,089 + QEN71_RS31830 0.13 +0.9 493,090 - QEN71_RS31830 0.13 +0.3 493,090 - QEN71_RS31830 0.13 -1.0 493,090 - QEN71_RS31830 0.13 -0.7 493,090 - QEN71_RS31830 0.13 -0.9 493,131 + QEN71_RS31830 0.17 +0.1 493,132 - QEN71_RS31830 0.17 +0.1 493,132 - QEN71_RS31830 0.17 +0.8 493,132 - QEN71_RS31830 0.17 -0.5 493,132 - QEN71_RS31830 0.17 +0.6 493,133 - QEN71_RS31830 0.17 +0.7 493,210 + QEN71_RS31830 0.25 -1.2 493,381 - QEN71_RS31830 0.42 +0.0 493,408 - QEN71_RS31830 0.45 +0.5 493,411 - QEN71_RS31830 0.45 -0.2 493,421 + QEN71_RS31830 0.46 +1.4 493,422 - QEN71_RS31830 0.46 -0.0 493,456 - QEN71_RS31830 0.49 -1.2 493,533 + QEN71_RS31830 0.57 -0.9 493,536 - QEN71_RS31830 0.57 +0.4 493,659 + QEN71_RS31830 0.70 -0.7 493,659 + QEN71_RS31830 0.70 -0.5 493,659 + QEN71_RS31830 0.70 -0.8 493,660 - QEN71_RS31830 0.70 -0.6 493,984 + -0.4 494,002 + -0.8 494,007 + +0.1 494,008 - -0.7 494,225 + QEN71_RS31835 0.33 -0.6 494,288 + QEN71_RS31835 0.44 -0.2 494,450 + QEN71_RS31835 0.74 -0.4 494,451 - QEN71_RS31835 0.74 +1.0 494,515 - QEN71_RS31835 0.85 +0.5 494,515 - QEN71_RS31835 0.85 +0.9 494,516 + QEN71_RS31835 0.86 -0.0 494,517 - QEN71_RS31835 0.86 -0.2 494,544 + -0.1 494,545 - -0.7
Or see this region's nucleotide sequence