Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS23965

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS23950 and QEN71_RS23955 are separated by 305 nucleotidesQEN71_RS23955 and QEN71_RS23960 are separated by 59 nucleotidesQEN71_RS23960 and QEN71_RS23965 are separated by 64 nucleotidesQEN71_RS23965 and QEN71_RS23970 are separated by 460 nucleotides QEN71_RS23950: QEN71_RS23950 - 23S ribosomal RNA, at 5,331,810 to 5,334,690 _RS23950 QEN71_RS23955: QEN71_RS23955 - tRNA-Ala, at 5,334,996 to 5,335,071 _RS23955 QEN71_RS23960: QEN71_RS23960 - tRNA-Ile, at 5,335,131 to 5,335,207 _RS23960 QEN71_RS23965: QEN71_RS23965 - 16S ribosomal RNA, at 5,335,272 to 5,336,802 _RS23965 QEN71_RS23970: QEN71_RS23970 - AI-2E family transporter, at 5,337,263 to 5,338,384 _RS23970 Position (kb) 5335 5336 5337Strain fitness (log2 ratio) -2 -1 0 1 2at 5337.264 kb on + strandat 5337.264 kb on + strandat 5337.264 kb on + strandat 5337.264 kb on + strandat 5337.265 kb on - strandat 5337.265 kb on - strandat 5337.265 kb on - strandat 5337.265 kb on - strandat 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.376 kb on + strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.377 kb on - strand, within QEN71_RS23970at 5337.378 kb on + strand, within QEN71_RS23970at 5337.378 kb on + strand, within QEN71_RS23970at 5337.378 kb on + strand, within QEN71_RS23970at 5337.378 kb on + strand, within QEN71_RS23970at 5337.379 kb on - strand, within QEN71_RS23970at 5337.379 kb on - strand, within QEN71_RS23970at 5337.379 kb on - strand, within QEN71_RS23970at 5337.379 kb on - strand, within QEN71_RS23970at 5337.379 kb on - strand, within QEN71_RS23970at 5337.379 kb on - strand, within QEN71_RS23970at 5337.379 kb on - strand, within QEN71_RS23970at 5337.379 kb on - strand, within QEN71_RS23970at 5337.523 kb on + strand, within QEN71_RS23970at 5337.523 kb on + strand, within QEN71_RS23970at 5337.523 kb on + strand, within QEN71_RS23970at 5337.523 kb on + strand, within QEN71_RS23970at 5337.523 kb on + strand, within QEN71_RS23970at 5337.523 kb on + strand, within QEN71_RS23970at 5337.523 kb on + strand, within QEN71_RS23970at 5337.523 kb on + strand, within QEN71_RS23970at 5337.524 kb on - strand, within QEN71_RS23970at 5337.524 kb on - strand, within QEN71_RS23970at 5337.524 kb on - strand, within QEN71_RS23970at 5337.524 kb on - strand, within QEN71_RS23970at 5337.524 kb on - strand, within QEN71_RS23970at 5337.524 kb on - strand, within QEN71_RS23970at 5337.524 kb on - strand, within QEN71_RS23970at 5337.524 kb on - strand, within QEN71_RS23970at 5337.524 kb on - strand, within QEN71_RS23970at 5337.585 kb on + strand, within QEN71_RS23970at 5337.585 kb on + strand, within QEN71_RS23970at 5337.585 kb on + strand, within QEN71_RS23970at 5337.585 kb on + strand, within QEN71_RS23970at 5337.585 kb on + strand, within QEN71_RS23970at 5337.585 kb on + strand, within QEN71_RS23970at 5337.585 kb on + strand, within QEN71_RS23970at 5337.586 kb on - strand, within QEN71_RS23970at 5337.586 kb on - strand, within QEN71_RS23970at 5337.747 kb on + strand, within QEN71_RS23970at 5337.747 kb on + strand, within QEN71_RS23970at 5337.747 kb on + strand, within QEN71_RS23970at 5337.747 kb on + strand, within QEN71_RS23970at 5337.747 kb on + strand, within QEN71_RS23970at 5337.747 kb on + strand, within QEN71_RS23970at 5337.747 kb on + strand, within QEN71_RS23970at 5337.747 kb on + strand, within QEN71_RS23970at 5337.747 kb on + strand, within QEN71_RS23970at 5337.747 kb on + strand, within QEN71_RS23970at 5337.747 kb on + strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.748 kb on - strand, within QEN71_RS23970at 5337.789 kb on + strand, within QEN71_RS23970at 5337.789 kb on + strand, within QEN71_RS23970at 5337.789 kb on + strand, within QEN71_RS23970at 5337.789 kb on + strand, within QEN71_RS23970at 5337.790 kb on - strand, within QEN71_RS23970at 5337.790 kb on - strand, within QEN71_RS23970at 5337.790 kb on - strand, within QEN71_RS23970at 5337.790 kb on - strand, within QEN71_RS23970at 5337.790 kb on - strand, within QEN71_RS23970at 5337.790 kb on - strand, within QEN71_RS23970at 5337.790 kb on - strand, within QEN71_RS23970

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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5,337,264 + -0.5
5,337,264 + -0.1
5,337,264 + -2.3
5,337,264 + -0.1
5,337,265 - -0.1
5,337,265 - -0.8
5,337,265 - +1.3
5,337,265 - -0.5
5,337,376 + QEN71_RS23970 0.10 -0.8
5,337,376 + QEN71_RS23970 0.10 +0.7
5,337,376 + QEN71_RS23970 0.10 -0.7
5,337,376 + QEN71_RS23970 0.10 -1.6
5,337,376 + QEN71_RS23970 0.10 +0.3
5,337,376 + QEN71_RS23970 0.10 +0.1
5,337,376 + QEN71_RS23970 0.10 -0.6
5,337,376 + QEN71_RS23970 0.10 -0.1
5,337,376 + QEN71_RS23970 0.10 +0.0
5,337,376 + QEN71_RS23970 0.10 -0.4
5,337,376 + QEN71_RS23970 0.10 -0.4
5,337,376 + QEN71_RS23970 0.10 +0.0
5,337,376 + QEN71_RS23970 0.10 +0.7
5,337,376 + QEN71_RS23970 0.10 -0.6
5,337,376 + QEN71_RS23970 0.10 -0.6
5,337,376 + QEN71_RS23970 0.10 -0.5
5,337,376 + QEN71_RS23970 0.10 +0.0
5,337,376 + QEN71_RS23970 0.10 -0.1
5,337,376 + QEN71_RS23970 0.10 -1.2
5,337,376 + QEN71_RS23970 0.10 -0.1
5,337,376 + QEN71_RS23970 0.10 -0.3
5,337,376 + QEN71_RS23970 0.10 +0.0
5,337,376 + QEN71_RS23970 0.10 -0.6
5,337,376 + QEN71_RS23970 0.10 -0.1
5,337,376 + QEN71_RS23970 0.10 +1.7
5,337,376 + QEN71_RS23970 0.10 +0.9
5,337,376 + QEN71_RS23970 0.10 -0.3
5,337,376 + QEN71_RS23970 0.10 +0.0
5,337,376 + QEN71_RS23970 0.10 +0.9
5,337,376 + QEN71_RS23970 0.10 -0.3
5,337,376 + QEN71_RS23970 0.10 -0.6
5,337,376 + QEN71_RS23970 0.10 +0.2
5,337,376 + QEN71_RS23970 0.10 +0.3
5,337,376 + QEN71_RS23970 0.10 +0.5
5,337,377 - QEN71_RS23970 0.10 -1.4
5,337,377 - QEN71_RS23970 0.10 -0.2
5,337,377 - QEN71_RS23970 0.10 -1.4
5,337,377 - QEN71_RS23970 0.10 -0.7
5,337,377 - QEN71_RS23970 0.10 +0.8
5,337,377 - QEN71_RS23970 0.10 +0.7
5,337,377 - QEN71_RS23970 0.10 +0.9
5,337,377 - QEN71_RS23970 0.10 +1.0
5,337,377 - QEN71_RS23970 0.10 -0.0
5,337,377 - QEN71_RS23970 0.10 +0.1
5,337,377 - QEN71_RS23970 0.10 +1.7
5,337,377 - QEN71_RS23970 0.10 +1.3
5,337,377 - QEN71_RS23970 0.10 -0.9
5,337,377 - QEN71_RS23970 0.10 -0.0
5,337,377 - QEN71_RS23970 0.10 +0.9
5,337,377 - QEN71_RS23970 0.10 +0.2
5,337,377 - QEN71_RS23970 0.10 +0.6
5,337,377 - QEN71_RS23970 0.10 -0.1
5,337,377 - QEN71_RS23970 0.10 +0.6
5,337,377 - QEN71_RS23970 0.10 -0.2
5,337,377 - QEN71_RS23970 0.10 -0.7
5,337,377 - QEN71_RS23970 0.10 -0.1
5,337,377 - QEN71_RS23970 0.10 -0.1
5,337,377 - QEN71_RS23970 0.10 -0.1
5,337,377 - QEN71_RS23970 0.10 +0.7
5,337,377 - QEN71_RS23970 0.10 -0.0
5,337,377 - QEN71_RS23970 0.10 +0.4
5,337,377 - QEN71_RS23970 0.10 -1.2
5,337,377 - QEN71_RS23970 0.10 +0.3
5,337,377 - QEN71_RS23970 0.10 +0.6
5,337,377 - QEN71_RS23970 0.10 +0.5
5,337,378 + QEN71_RS23970 0.10 -0.0
5,337,378 + QEN71_RS23970 0.10 -1.4
5,337,378 + QEN71_RS23970 0.10 -0.9
5,337,378 + QEN71_RS23970 0.10 -0.1
5,337,379 - QEN71_RS23970 0.10 -0.7
5,337,379 - QEN71_RS23970 0.10 -0.7
5,337,379 - QEN71_RS23970 0.10 +0.0
5,337,379 - QEN71_RS23970 0.10 -0.5
5,337,379 - QEN71_RS23970 0.10 +2.5
5,337,379 - QEN71_RS23970 0.10 +0.1
5,337,379 - QEN71_RS23970 0.10 -1.1
5,337,379 - QEN71_RS23970 0.10 -0.7
5,337,523 + QEN71_RS23970 0.23 -1.2
5,337,523 + QEN71_RS23970 0.23 +0.2
5,337,523 + QEN71_RS23970 0.23 -0.4
5,337,523 + QEN71_RS23970 0.23 -0.4
5,337,523 + QEN71_RS23970 0.23 +1.0
5,337,523 + QEN71_RS23970 0.23 -0.4
5,337,523 + QEN71_RS23970 0.23 -0.5
5,337,523 + QEN71_RS23970 0.23 +0.3
5,337,524 - QEN71_RS23970 0.23 -0.2
5,337,524 - QEN71_RS23970 0.23 +1.3
5,337,524 - QEN71_RS23970 0.23 +0.2
5,337,524 - QEN71_RS23970 0.23 -0.3
5,337,524 - QEN71_RS23970 0.23 -0.6
5,337,524 - QEN71_RS23970 0.23 -0.1
5,337,524 - QEN71_RS23970 0.23 +1.2
5,337,524 - QEN71_RS23970 0.23 -0.0
5,337,524 - QEN71_RS23970 0.23 -0.1
5,337,585 + QEN71_RS23970 0.29 -1.1
5,337,585 + QEN71_RS23970 0.29 +0.5
5,337,585 + QEN71_RS23970 0.29 -0.8
5,337,585 + QEN71_RS23970 0.29 -0.6
5,337,585 + QEN71_RS23970 0.29 -1.4
5,337,585 + QEN71_RS23970 0.29 -0.9
5,337,585 + QEN71_RS23970 0.29 -0.8
5,337,586 - QEN71_RS23970 0.29 +0.9
5,337,586 - QEN71_RS23970 0.29 +0.6
5,337,747 + QEN71_RS23970 0.43 -1.1
5,337,747 + QEN71_RS23970 0.43 +0.9
5,337,747 + QEN71_RS23970 0.43 -0.0
5,337,747 + QEN71_RS23970 0.43 -0.4
5,337,747 + QEN71_RS23970 0.43 +0.5
5,337,747 + QEN71_RS23970 0.43 +1.0
5,337,747 + QEN71_RS23970 0.43 -0.4
5,337,747 + QEN71_RS23970 0.43 -1.6
5,337,747 + QEN71_RS23970 0.43 -1.4
5,337,747 + QEN71_RS23970 0.43 -0.5
5,337,747 + QEN71_RS23970 0.43 -1.1
5,337,748 - QEN71_RS23970 0.43 +0.0
5,337,748 - QEN71_RS23970 0.43 +0.7
5,337,748 - QEN71_RS23970 0.43 -1.4
5,337,748 - QEN71_RS23970 0.43 +0.7
5,337,748 - QEN71_RS23970 0.43 -0.5
5,337,748 - QEN71_RS23970 0.43 -0.3
5,337,748 - QEN71_RS23970 0.43 +0.5
5,337,748 - QEN71_RS23970 0.43 -0.8
5,337,748 - QEN71_RS23970 0.43 -0.4
5,337,748 - QEN71_RS23970 0.43 +0.2
5,337,748 - QEN71_RS23970 0.43 +0.7
5,337,748 - QEN71_RS23970 0.43 -0.4
5,337,748 - QEN71_RS23970 0.43 +0.2
5,337,748 - QEN71_RS23970 0.43 -0.2
5,337,748 - QEN71_RS23970 0.43 +0.1
5,337,748 - QEN71_RS23970 0.43 +0.6
5,337,748 - QEN71_RS23970 0.43 -1.1
5,337,748 - QEN71_RS23970 0.43 -0.1
5,337,748 - QEN71_RS23970 0.43 -0.2
5,337,748 - QEN71_RS23970 0.43 +0.6
5,337,789 + QEN71_RS23970 0.47 +1.9
5,337,789 + QEN71_RS23970 0.47 +0.0
5,337,789 + QEN71_RS23970 0.47 -2.3
5,337,789 + QEN71_RS23970 0.47 -0.2
5,337,790 - QEN71_RS23970 0.47 -0.1
5,337,790 - QEN71_RS23970 0.47 +0.6
5,337,790 - QEN71_RS23970 0.47 +0.6
5,337,790 - QEN71_RS23970 0.47 +0.2
5,337,790 - QEN71_RS23970 0.47 +0.3
5,337,790 - QEN71_RS23970 0.47 +0.0
5,337,790 - QEN71_RS23970 0.47 +0.1

Or see this region's nucleotide sequence