Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS23540

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS23530 and QEN71_RS23535 are separated by 51 nucleotidesQEN71_RS23535 and QEN71_RS23540 overlap by 94 nucleotidesQEN71_RS23540 and QEN71_RS23545 are separated by 101 nucleotides QEN71_RS23530: QEN71_RS23530 - thioredoxin family protein, at 5,242,389 to 5,243,165 _RS23530 QEN71_RS23535: QEN71_RS23535 - SRPBCC domain-containing protein, at 5,243,217 to 5,243,645 _RS23535 QEN71_RS23540: QEN71_RS23540 - metalloregulator ArsR/SmtB family transcription factor, at 5,243,552 to 5,243,974 _RS23540 QEN71_RS23545: QEN71_RS23545 - NCS2 family permease, at 5,244,076 to 5,245,485 _RS23545 Position (kb) 5243 5244Strain fitness (log2 ratio) -2 -1 0 1at 5242.552 kb on + strand, within QEN71_RS23530at 5242.552 kb on + strand, within QEN71_RS23530at 5242.552 kb on + strand, within QEN71_RS23530at 5242.552 kb on + strand, within QEN71_RS23530at 5242.553 kb on - strand, within QEN71_RS23530at 5242.553 kb on - strand, within QEN71_RS23530at 5242.553 kb on - strand, within QEN71_RS23530at 5242.553 kb on - strand, within QEN71_RS23530at 5242.663 kb on + strand, within QEN71_RS23530at 5242.663 kb on + strand, within QEN71_RS23530at 5242.664 kb on - strand, within QEN71_RS23530at 5242.664 kb on - strand, within QEN71_RS23530at 5242.664 kb on - strand, within QEN71_RS23530at 5242.684 kb on + strand, within QEN71_RS23530at 5242.685 kb on - strand, within QEN71_RS23530at 5242.738 kb on + strand, within QEN71_RS23530at 5242.738 kb on + strand, within QEN71_RS23530at 5242.840 kb on + strand, within QEN71_RS23530at 5242.840 kb on + strand, within QEN71_RS23530at 5242.840 kb on + strand, within QEN71_RS23530at 5242.841 kb on - strand, within QEN71_RS23530at 5242.841 kb on - strand, within QEN71_RS23530at 5242.841 kb on - strand, within QEN71_RS23530at 5242.841 kb on - strand, within QEN71_RS23530at 5242.841 kb on - strand, within QEN71_RS23530at 5242.841 kb on - strand, within QEN71_RS23530at 5242.949 kb on - strand, within QEN71_RS23530at 5243.018 kb on + strand, within QEN71_RS23530at 5243.018 kb on + strand, within QEN71_RS23530at 5243.018 kb on + strand, within QEN71_RS23530at 5243.018 kb on + strand, within QEN71_RS23530at 5243.019 kb on - strand, within QEN71_RS23530at 5243.019 kb on - strand, within QEN71_RS23530at 5243.019 kb on - strand, within QEN71_RS23530at 5243.019 kb on - strand, within QEN71_RS23530at 5243.019 kb on - strand, within QEN71_RS23530at 5243.020 kb on + strand, within QEN71_RS23530at 5243.020 kb on + strand, within QEN71_RS23530at 5243.020 kb on + strand, within QEN71_RS23530at 5243.020 kb on + strand, within QEN71_RS23530at 5243.021 kb on - strand, within QEN71_RS23530at 5243.021 kb on - strand, within QEN71_RS23530at 5243.021 kb on - strand, within QEN71_RS23530at 5243.200 kb on - strandat 5243.227 kb on + strandat 5243.227 kb on + strandat 5243.227 kb on + strandat 5243.227 kb on + strandat 5243.324 kb on + strand, within QEN71_RS23535at 5243.324 kb on + strand, within QEN71_RS23535at 5243.325 kb on - strand, within QEN71_RS23535at 5243.398 kb on + strand, within QEN71_RS23535at 5243.399 kb on - strand, within QEN71_RS23535at 5243.399 kb on - strand, within QEN71_RS23535at 5243.399 kb on - strand, within QEN71_RS23535at 5243.661 kb on + strand, within QEN71_RS23540at 5243.661 kb on + strand, within QEN71_RS23540at 5243.704 kb on - strand, within QEN71_RS23540at 5243.704 kb on - strand, within QEN71_RS23540at 5243.704 kb on - strand, within QEN71_RS23540at 5243.903 kb on + strand, within QEN71_RS23540at 5243.903 kb on + strand, within QEN71_RS23540at 5243.904 kb on - strand, within QEN71_RS23540at 5243.904 kb on - strand, within QEN71_RS23540at 5243.986 kb on + strandat 5244.037 kb on - strandat 5244.098 kb on + strandat 5244.098 kb on + strandat 5244.098 kb on + strandat 5244.099 kb on - strandat 5244.283 kb on - strand, within QEN71_RS23545at 5244.283 kb on - strand, within QEN71_RS23545at 5244.323 kb on + strand, within QEN71_RS23545at 5244.323 kb on + strand, within QEN71_RS23545at 5244.323 kb on + strand, within QEN71_RS23545at 5244.324 kb on - strand, within QEN71_RS23545at 5244.324 kb on - strand, within QEN71_RS23545at 5244.347 kb on + strand, within QEN71_RS23545at 5244.347 kb on + strand, within QEN71_RS23545at 5244.347 kb on + strand, within QEN71_RS23545at 5244.347 kb on + strand, within QEN71_RS23545at 5244.347 kb on + strand, within QEN71_RS23545at 5244.348 kb on - strand, within QEN71_RS23545at 5244.348 kb on - strand, within QEN71_RS23545at 5244.348 kb on - strand, within QEN71_RS23545at 5244.465 kb on + strand, within QEN71_RS23545at 5244.466 kb on - strand, within QEN71_RS23545at 5244.467 kb on + strand, within QEN71_RS23545at 5244.467 kb on + strand, within QEN71_RS23545at 5244.467 kb on + strand, within QEN71_RS23545at 5244.467 kb on + strand, within QEN71_RS23545at 5244.468 kb on - strand, within QEN71_RS23545at 5244.468 kb on - strand, within QEN71_RS23545at 5244.468 kb on - strand, within QEN71_RS23545at 5244.468 kb on - strand, within QEN71_RS23545at 5244.891 kb on + strand, within QEN71_RS23545at 5244.891 kb on + strand, within QEN71_RS23545at 5244.892 kb on - strand, within QEN71_RS23545at 5244.892 kb on - strand, within QEN71_RS23545

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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5,242,552 + QEN71_RS23530 0.21 +0.2
5,242,552 + QEN71_RS23530 0.21 +0.4
5,242,552 + QEN71_RS23530 0.21 -0.3
5,242,552 + QEN71_RS23530 0.21 -0.3
5,242,553 - QEN71_RS23530 0.21 -1.2
5,242,553 - QEN71_RS23530 0.21 -0.3
5,242,553 - QEN71_RS23530 0.21 -1.1
5,242,553 - QEN71_RS23530 0.21 -0.4
5,242,663 + QEN71_RS23530 0.35 +0.2
5,242,663 + QEN71_RS23530 0.35 +0.3
5,242,664 - QEN71_RS23530 0.35 -1.2
5,242,664 - QEN71_RS23530 0.35 +0.5
5,242,664 - QEN71_RS23530 0.35 -0.1
5,242,684 + QEN71_RS23530 0.38 -0.3
5,242,685 - QEN71_RS23530 0.38 +1.5
5,242,738 + QEN71_RS23530 0.45 -1.9
5,242,738 + QEN71_RS23530 0.45 +0.2
5,242,840 + QEN71_RS23530 0.58 +1.5
5,242,840 + QEN71_RS23530 0.58 -1.9
5,242,840 + QEN71_RS23530 0.58 +0.4
5,242,841 - QEN71_RS23530 0.58 +0.8
5,242,841 - QEN71_RS23530 0.58 -1.0
5,242,841 - QEN71_RS23530 0.58 +1.0
5,242,841 - QEN71_RS23530 0.58 -1.1
5,242,841 - QEN71_RS23530 0.58 +1.1
5,242,841 - QEN71_RS23530 0.58 -1.8
5,242,949 - QEN71_RS23530 0.72 -1.7
5,243,018 + QEN71_RS23530 0.81 +0.8
5,243,018 + QEN71_RS23530 0.81 -0.4
5,243,018 + QEN71_RS23530 0.81 +0.3
5,243,018 + QEN71_RS23530 0.81 +0.9
5,243,019 - QEN71_RS23530 0.81 +0.5
5,243,019 - QEN71_RS23530 0.81 -0.4
5,243,019 - QEN71_RS23530 0.81 -0.3
5,243,019 - QEN71_RS23530 0.81 +0.3
5,243,019 - QEN71_RS23530 0.81 +0.5
5,243,020 + QEN71_RS23530 0.81 +0.5
5,243,020 + QEN71_RS23530 0.81 +0.9
5,243,020 + QEN71_RS23530 0.81 -0.3
5,243,020 + QEN71_RS23530 0.81 +0.3
5,243,021 - QEN71_RS23530 0.81 -0.4
5,243,021 - QEN71_RS23530 0.81 -0.7
5,243,021 - QEN71_RS23530 0.81 +0.5
5,243,200 - -0.9
5,243,227 + -0.2
5,243,227 + -0.2
5,243,227 + -0.4
5,243,227 + -1.2
5,243,324 + QEN71_RS23535 0.25 -0.3
5,243,324 + QEN71_RS23535 0.25 -0.2
5,243,325 - QEN71_RS23535 0.25 +0.2
5,243,398 + QEN71_RS23535 0.42 +0.2
5,243,399 - QEN71_RS23535 0.42 +0.2
5,243,399 - QEN71_RS23535 0.42 -0.3
5,243,399 - QEN71_RS23535 0.42 -0.6
5,243,661 + QEN71_RS23540 0.26 -1.4
5,243,661 + QEN71_RS23540 0.26 -0.2
5,243,704 - QEN71_RS23540 0.36 -0.6
5,243,704 - QEN71_RS23540 0.36 -0.8
5,243,704 - QEN71_RS23540 0.36 -1.4
5,243,903 + QEN71_RS23540 0.83 -0.7
5,243,903 + QEN71_RS23540 0.83 -1.1
5,243,904 - QEN71_RS23540 0.83 -0.1
5,243,904 - QEN71_RS23540 0.83 -1.4
5,243,986 + +0.3
5,244,037 - +0.4
5,244,098 + +0.3
5,244,098 + +0.0
5,244,098 + +1.2
5,244,099 - -0.2
5,244,283 - QEN71_RS23545 0.15 +0.7
5,244,283 - QEN71_RS23545 0.15 -0.3
5,244,323 + QEN71_RS23545 0.18 -1.5
5,244,323 + QEN71_RS23545 0.18 -0.5
5,244,323 + QEN71_RS23545 0.18 +1.0
5,244,324 - QEN71_RS23545 0.18 +0.9
5,244,324 - QEN71_RS23545 0.18 -1.7
5,244,347 + QEN71_RS23545 0.19 +1.1
5,244,347 + QEN71_RS23545 0.19 -0.2
5,244,347 + QEN71_RS23545 0.19 -0.2
5,244,347 + QEN71_RS23545 0.19 -0.2
5,244,347 + QEN71_RS23545 0.19 +0.3
5,244,348 - QEN71_RS23545 0.19 -1.1
5,244,348 - QEN71_RS23545 0.19 +1.3
5,244,348 - QEN71_RS23545 0.19 -1.9
5,244,465 + QEN71_RS23545 0.28 -0.5
5,244,466 - QEN71_RS23545 0.28 +0.3
5,244,467 + QEN71_RS23545 0.28 +0.8
5,244,467 + QEN71_RS23545 0.28 +0.0
5,244,467 + QEN71_RS23545 0.28 +0.4
5,244,467 + QEN71_RS23545 0.28 -0.7
5,244,468 - QEN71_RS23545 0.28 -0.7
5,244,468 - QEN71_RS23545 0.28 -0.3
5,244,468 - QEN71_RS23545 0.28 -0.1
5,244,468 - QEN71_RS23545 0.28 +0.9
5,244,891 + QEN71_RS23545 0.58 -1.4
5,244,891 + QEN71_RS23545 0.58 -0.4
5,244,892 - QEN71_RS23545 0.58 +0.6
5,244,892 - QEN71_RS23545 0.58 -0.2

Or see this region's nucleotide sequence