Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS22590 and QEN71_RS22595 are separated by 365 nucleotides QEN71_RS22595 and QEN71_RS22600 are separated by 27 nucleotides QEN71_RS22600 and QEN71_RS22605 are separated by 114 nucleotides
QEN71_RS22590: QEN71_RS22590 - sulfate ABC transporter substrate-binding protein, at 5,017,243 to 5,018,286
_RS22590
QEN71_RS22595: QEN71_RS22595 - transcriptional repressor LexA, at 5,018,652 to 5,019,302
_RS22595
QEN71_RS22600: QEN71_RS22600 - hypothetical protein, at 5,019,330 to 5,019,674
_RS22600
QEN71_RS22605: QEN71_RS22605 - DUF2939 domain-containing protein, at 5,019,789 to 5,020,451
_RS22605
Position (kb) 5018
5019
5020 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5017.691 kb on + strand, within QEN71_RS22590 at 5017.692 kb on - strand, within QEN71_RS22590 at 5017.692 kb on - strand, within QEN71_RS22590 at 5017.692 kb on - strand, within QEN71_RS22590 at 5017.769 kb on + strand, within QEN71_RS22590 at 5017.769 kb on + strand, within QEN71_RS22590 at 5017.770 kb on - strand, within QEN71_RS22590 at 5017.770 kb on - strand, within QEN71_RS22590 at 5017.770 kb on - strand, within QEN71_RS22590 at 5017.902 kb on - strand, within QEN71_RS22590 at 5017.979 kb on + strand, within QEN71_RS22590 at 5017.979 kb on + strand, within QEN71_RS22590 at 5017.979 kb on + strand, within QEN71_RS22590 at 5017.979 kb on + strand, within QEN71_RS22590 at 5017.979 kb on + strand, within QEN71_RS22590 at 5017.979 kb on + strand, within QEN71_RS22590 at 5017.980 kb on - strand, within QEN71_RS22590 at 5018.129 kb on + strand, within QEN71_RS22590 at 5018.130 kb on - strand, within QEN71_RS22590 at 5018.130 kb on - strand, within QEN71_RS22590 at 5018.130 kb on - strand, within QEN71_RS22590 at 5018.130 kb on - strand, within QEN71_RS22590 at 5018.130 kb on - strand, within QEN71_RS22590 at 5018.150 kb on + strand, within QEN71_RS22590 at 5018.151 kb on - strand, within QEN71_RS22590 at 5018.151 kb on - strand, within QEN71_RS22590 at 5018.151 kb on - strand, within QEN71_RS22590 at 5018.151 kb on - strand, within QEN71_RS22590 at 5018.173 kb on - strand, within QEN71_RS22590 at 5018.431 kb on + strand at 5018.432 kb on - strand at 5018.432 kb on - strand at 5018.443 kb on + strand at 5018.444 kb on - strand at 5018.444 kb on - strand at 5018.452 kb on - strand at 5018.478 kb on + strand at 5018.485 kb on + strand at 5018.580 kb on + strand at 5018.580 kb on + strand at 5018.581 kb on - strand at 5018.581 kb on - strand at 5018.581 kb on - strand at 5018.581 kb on - strand at 5018.581 kb on - strand at 5018.581 kb on - strand at 5018.586 kb on - strand at 5018.606 kb on + strand at 5018.607 kb on - strand at 5018.611 kb on + strand at 5018.611 kb on + strand at 5018.639 kb on + strand at 5018.639 kb on + strand at 5018.639 kb on + strand at 5018.640 kb on - strand at 5018.808 kb on - strand, within QEN71_RS22595 at 5018.951 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.988 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5018.990 kb on + strand, within QEN71_RS22595 at 5019.027 kb on + strand, within QEN71_RS22595 at 5019.027 kb on + strand, within QEN71_RS22595 at 5019.028 kb on - strand, within QEN71_RS22595 at 5019.216 kb on + strand, within QEN71_RS22595 at 5019.224 kb on + strand, within QEN71_RS22595 at 5019.298 kb on + strand at 5019.300 kb on + strand at 5019.301 kb on - strand at 5019.304 kb on + strand at 5019.304 kb on + strand at 5019.305 kb on - strand at 5019.305 kb on - strand at 5019.305 kb on - strand at 5019.305 kb on - strand at 5019.305 kb on - strand at 5019.305 kb on - strand at 5019.305 kb on - strand at 5019.564 kb on + strand, within QEN71_RS22600 at 5019.564 kb on + strand, within QEN71_RS22600 at 5019.565 kb on - strand, within QEN71_RS22600 at 5019.672 kb on + strand at 5019.673 kb on - strand at 5019.876 kb on + strand, within QEN71_RS22605 at 5019.882 kb on + strand, within QEN71_RS22605 at 5019.882 kb on + strand, within QEN71_RS22605 at 5019.882 kb on + strand, within QEN71_RS22605 at 5019.882 kb on + strand, within QEN71_RS22605 at 5019.883 kb on - strand, within QEN71_RS22605 at 5019.883 kb on - strand, within QEN71_RS22605 at 5019.883 kb on - strand, within QEN71_RS22605 at 5019.883 kb on - strand, within QEN71_RS22605 at 5019.894 kb on + strand, within QEN71_RS22605 at 5019.894 kb on + strand, within QEN71_RS22605 at 5019.894 kb on + strand, within QEN71_RS22605 at 5019.894 kb on + strand, within QEN71_RS22605 at 5019.894 kb on + strand, within QEN71_RS22605 at 5019.894 kb on + strand, within QEN71_RS22605 at 5019.894 kb on + strand, within QEN71_RS22605 at 5019.895 kb on - strand, within QEN71_RS22605 at 5019.895 kb on - strand, within QEN71_RS22605 at 5019.895 kb on - strand, within QEN71_RS22605 at 5019.896 kb on + strand, within QEN71_RS22605 at 5019.897 kb on - strand, within QEN71_RS22605 at 5019.957 kb on + strand, within QEN71_RS22605 at 5019.957 kb on + strand, within QEN71_RS22605 at 5019.957 kb on + strand, within QEN71_RS22605 at 5019.957 kb on + strand, within QEN71_RS22605 at 5019.958 kb on - strand, within QEN71_RS22605 at 5019.958 kb on - strand, within QEN71_RS22605 at 5019.958 kb on - strand, within QEN71_RS22605 at 5019.958 kb on - strand, within QEN71_RS22605 at 5020.107 kb on + strand, within QEN71_RS22605 at 5020.107 kb on + strand, within QEN71_RS22605 at 5020.107 kb on + strand, within QEN71_RS22605 at 5020.107 kb on + strand, within QEN71_RS22605 at 5020.107 kb on + strand, within QEN71_RS22605 at 5020.108 kb on - strand, within QEN71_RS22605 at 5020.108 kb on - strand, within QEN71_RS22605 at 5020.108 kb on - strand, within QEN71_RS22605 at 5020.108 kb on - strand, within QEN71_RS22605 at 5020.139 kb on + strand, within QEN71_RS22605 at 5020.140 kb on - strand, within QEN71_RS22605 at 5020.140 kb on - strand, within QEN71_RS22605 at 5020.206 kb on - strand, within QEN71_RS22605 at 5020.206 kb on - strand, within QEN71_RS22605
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 5,017,691 + QEN71_RS22590 0.43 -0.2 5,017,692 - QEN71_RS22590 0.43 -1.1 5,017,692 - QEN71_RS22590 0.43 -0.1 5,017,692 - QEN71_RS22590 0.43 +0.7 5,017,769 + QEN71_RS22590 0.50 +0.1 5,017,769 + QEN71_RS22590 0.50 -0.5 5,017,770 - QEN71_RS22590 0.50 -0.5 5,017,770 - QEN71_RS22590 0.50 -1.1 5,017,770 - QEN71_RS22590 0.50 -0.1 5,017,902 - QEN71_RS22590 0.63 +0.9 5,017,979 + QEN71_RS22590 0.70 +0.2 5,017,979 + QEN71_RS22590 0.70 -0.2 5,017,979 + QEN71_RS22590 0.70 -0.4 5,017,979 + QEN71_RS22590 0.70 +1.1 5,017,979 + QEN71_RS22590 0.70 -0.1 5,017,979 + QEN71_RS22590 0.70 -0.6 5,017,980 - QEN71_RS22590 0.71 -0.1 5,018,129 + QEN71_RS22590 0.85 -0.1 5,018,130 - QEN71_RS22590 0.85 +0.3 5,018,130 - QEN71_RS22590 0.85 +0.5 5,018,130 - QEN71_RS22590 0.85 -0.1 5,018,130 - QEN71_RS22590 0.85 -0.0 5,018,130 - QEN71_RS22590 0.85 +0.6 5,018,150 + QEN71_RS22590 0.87 -0.2 5,018,151 - QEN71_RS22590 0.87 +0.4 5,018,151 - QEN71_RS22590 0.87 -1.0 5,018,151 - QEN71_RS22590 0.87 +0.5 5,018,151 - QEN71_RS22590 0.87 +1.9 5,018,173 - QEN71_RS22590 0.89 +1.0 5,018,431 + -0.3 5,018,432 - -0.5 5,018,432 - +1.1 5,018,443 + -2.6 5,018,444 - -0.6 5,018,444 - +0.4 5,018,452 - +0.7 5,018,478 + -0.5 5,018,485 + -0.3 5,018,580 + -0.4 5,018,580 + +0.2 5,018,581 - +0.7 5,018,581 - +0.1 5,018,581 - -0.9 5,018,581 - -0.1 5,018,581 - +0.0 5,018,581 - -1.1 5,018,586 - -0.9 5,018,606 + -1.5 5,018,607 - -1.5 5,018,611 + +0.2 5,018,611 + +0.2 5,018,639 + +0.3 5,018,639 + -0.2 5,018,639 + -0.1 5,018,640 - +0.6 5,018,808 - QEN71_RS22595 0.24 -1.0 5,018,951 + QEN71_RS22595 0.46 -1.4 5,018,988 + QEN71_RS22595 0.52 -2.9 5,018,988 + QEN71_RS22595 0.52 -1.4 5,018,988 + QEN71_RS22595 0.52 -3.2 5,018,988 + QEN71_RS22595 0.52 -2.0 5,018,988 + QEN71_RS22595 0.52 -4.2 5,018,988 + QEN71_RS22595 0.52 -2.3 5,018,988 + QEN71_RS22595 0.52 -1.9 5,018,988 + QEN71_RS22595 0.52 -2.6 5,018,988 + QEN71_RS22595 0.52 -2.4 5,018,988 + QEN71_RS22595 0.52 -1.1 5,018,988 + QEN71_RS22595 0.52 -1.6 5,018,988 + QEN71_RS22595 0.52 -2.2 5,018,990 + QEN71_RS22595 0.52 -0.3 5,018,990 + QEN71_RS22595 0.52 -1.9 5,018,990 + QEN71_RS22595 0.52 -1.5 5,018,990 + QEN71_RS22595 0.52 -1.6 5,018,990 + QEN71_RS22595 0.52 -0.7 5,018,990 + QEN71_RS22595 0.52 -1.4 5,018,990 + QEN71_RS22595 0.52 -2.8 5,018,990 + QEN71_RS22595 0.52 -2.2 5,018,990 + QEN71_RS22595 0.52 -2.6 5,018,990 + QEN71_RS22595 0.52 -1.0 5,018,990 + QEN71_RS22595 0.52 -0.8 5,018,990 + QEN71_RS22595 0.52 -1.6 5,018,990 + QEN71_RS22595 0.52 -2.1 5,018,990 + QEN71_RS22595 0.52 -0.9 5,018,990 + QEN71_RS22595 0.52 -1.1 5,018,990 + QEN71_RS22595 0.52 -1.2 5,018,990 + QEN71_RS22595 0.52 -2.2 5,018,990 + QEN71_RS22595 0.52 -1.9 5,019,027 + QEN71_RS22595 0.58 -1.3 5,019,027 + QEN71_RS22595 0.58 +0.9 5,019,028 - QEN71_RS22595 0.58 -0.8 5,019,216 + QEN71_RS22595 0.87 -1.7 5,019,224 + QEN71_RS22595 0.88 -0.7 5,019,298 + -0.2 5,019,300 + +0.2 5,019,301 - -0.3 5,019,304 + -0.1 5,019,304 + -0.1 5,019,305 - +0.1 5,019,305 - +1.6 5,019,305 - -1.1 5,019,305 - -0.2 5,019,305 - -0.2 5,019,305 - +0.6 5,019,305 - -0.5 5,019,564 + QEN71_RS22600 0.68 +0.2 5,019,564 + QEN71_RS22600 0.68 -1.2 5,019,565 - QEN71_RS22600 0.68 -1.4 5,019,672 + -0.6 5,019,673 - +0.6 5,019,876 + QEN71_RS22605 0.13 -0.1 5,019,882 + QEN71_RS22605 0.14 -0.2 5,019,882 + QEN71_RS22605 0.14 +0.4 5,019,882 + QEN71_RS22605 0.14 -0.1 5,019,882 + QEN71_RS22605 0.14 -0.6 5,019,883 - QEN71_RS22605 0.14 +0.9 5,019,883 - QEN71_RS22605 0.14 +1.9 5,019,883 - QEN71_RS22605 0.14 +1.0 5,019,883 - QEN71_RS22605 0.14 -0.5 5,019,894 + QEN71_RS22605 0.16 +0.2 5,019,894 + QEN71_RS22605 0.16 +1.4 5,019,894 + QEN71_RS22605 0.16 +0.2 5,019,894 + QEN71_RS22605 0.16 +0.1 5,019,894 + QEN71_RS22605 0.16 +0.2 5,019,894 + QEN71_RS22605 0.16 -1.7 5,019,894 + QEN71_RS22605 0.16 +0.3 5,019,895 - QEN71_RS22605 0.16 -0.5 5,019,895 - QEN71_RS22605 0.16 -0.1 5,019,895 - QEN71_RS22605 0.16 -0.4 5,019,896 + QEN71_RS22605 0.16 -0.4 5,019,897 - QEN71_RS22605 0.16 -0.4 5,019,957 + QEN71_RS22605 0.25 -1.1 5,019,957 + QEN71_RS22605 0.25 -0.8 5,019,957 + QEN71_RS22605 0.25 -0.2 5,019,957 + QEN71_RS22605 0.25 +0.5 5,019,958 - QEN71_RS22605 0.25 +0.3 5,019,958 - QEN71_RS22605 0.25 +1.5 5,019,958 - QEN71_RS22605 0.25 +0.6 5,019,958 - QEN71_RS22605 0.25 -0.5 5,020,107 + QEN71_RS22605 0.48 -0.2 5,020,107 + QEN71_RS22605 0.48 +0.7 5,020,107 + QEN71_RS22605 0.48 -0.6 5,020,107 + QEN71_RS22605 0.48 -0.1 5,020,107 + QEN71_RS22605 0.48 -0.1 5,020,108 - QEN71_RS22605 0.48 -0.4 5,020,108 - QEN71_RS22605 0.48 -0.8 5,020,108 - QEN71_RS22605 0.48 -0.2 5,020,108 - QEN71_RS22605 0.48 +0.3 5,020,139 + QEN71_RS22605 0.53 -0.3 5,020,140 - QEN71_RS22605 0.53 +0.4 5,020,140 - QEN71_RS22605 0.53 -1.0 5,020,206 - QEN71_RS22605 0.63 -1.0 5,020,206 - QEN71_RS22605 0.63 +0.6
Or see this region's nucleotide sequence