Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21155

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21150 and QEN71_RS21155 are separated by 81 nucleotidesQEN71_RS21155 and QEN71_RS21160 are separated by 21 nucleotidesQEN71_RS21160 and QEN71_RS21165 are separated by 40 nucleotides QEN71_RS21150: QEN71_RS21150 - LysR family transcriptional regulator, at 4,691,372 to 4,692,280 _RS21150 QEN71_RS21155: QEN71_RS21155 - acyl-CoA dehydrogenase family protein, at 4,692,362 to 4,693,612 _RS21155 QEN71_RS21160: QEN71_RS21160 - SDR family oxidoreductase, at 4,693,634 to 4,694,398 _RS21160 QEN71_RS21165: QEN71_RS21165 - phosphotransferase, at 4,694,439 to 4,695,467 _RS21165 Position (kb) 4692 4693 4694Strain fitness (log2 ratio) -2 -1 0 1 2at 4691.373 kb on + strandat 4691.373 kb on + strandat 4691.466 kb on + strand, within QEN71_RS21150at 4691.466 kb on + strand, within QEN71_RS21150at 4691.467 kb on - strand, within QEN71_RS21150at 4691.467 kb on - strand, within QEN71_RS21150at 4691.524 kb on - strand, within QEN71_RS21150at 4691.595 kb on + strand, within QEN71_RS21150at 4691.595 kb on + strand, within QEN71_RS21150at 4691.595 kb on + strand, within QEN71_RS21150at 4691.595 kb on + strand, within QEN71_RS21150at 4691.595 kb on + strand, within QEN71_RS21150at 4691.595 kb on + strand, within QEN71_RS21150at 4691.595 kb on + strand, within QEN71_RS21150at 4691.596 kb on - strand, within QEN71_RS21150at 4691.596 kb on - strand, within QEN71_RS21150at 4691.596 kb on - strand, within QEN71_RS21150at 4691.596 kb on - strand, within QEN71_RS21150at 4691.596 kb on - strand, within QEN71_RS21150at 4691.596 kb on - strand, within QEN71_RS21150at 4691.596 kb on - strand, within QEN71_RS21150at 4691.709 kb on + strand, within QEN71_RS21150at 4692.308 kb on + strandat 4692.309 kb on - strandat 4692.309 kb on - strandat 4692.322 kb on + strandat 4692.387 kb on + strandat 4692.387 kb on + strandat 4692.387 kb on + strandat 4692.388 kb on - strandat 4692.388 kb on - strandat 4692.388 kb on - strandat 4692.388 kb on - strandat 4692.744 kb on + strand, within QEN71_RS21155at 4692.744 kb on + strand, within QEN71_RS21155at 4692.744 kb on + strand, within QEN71_RS21155at 4692.744 kb on + strand, within QEN71_RS21155at 4692.744 kb on + strand, within QEN71_RS21155at 4692.745 kb on - strand, within QEN71_RS21155at 4692.745 kb on - strand, within QEN71_RS21155at 4692.745 kb on - strand, within QEN71_RS21155at 4692.745 kb on - strand, within QEN71_RS21155at 4693.135 kb on - strand, within QEN71_RS21155at 4693.629 kb on + strandat 4693.629 kb on + strandat 4693.629 kb on + strandat 4693.630 kb on - strandat 4693.630 kb on - strandat 4693.630 kb on - strandat 4693.630 kb on - strandat 4693.630 kb on - strandat 4693.630 kb on - strandat 4693.635 kb on + strandat 4693.635 kb on + strandat 4693.636 kb on - strandat 4693.678 kb on + strandat 4693.680 kb on + strandat 4693.681 kb on - strandat 4693.704 kb on + strandat 4693.704 kb on + strandat 4693.705 kb on - strandat 4693.775 kb on - strand, within QEN71_RS21160at 4693.776 kb on + strand, within QEN71_RS21160at 4693.776 kb on + strand, within QEN71_RS21160at 4693.776 kb on + strand, within QEN71_RS21160at 4693.776 kb on + strand, within QEN71_RS21160at 4693.776 kb on + strand, within QEN71_RS21160at 4693.777 kb on - strand, within QEN71_RS21160at 4693.777 kb on - strand, within QEN71_RS21160at 4693.777 kb on - strand, within QEN71_RS21160at 4693.777 kb on - strand, within QEN71_RS21160at 4693.777 kb on - strand, within QEN71_RS21160at 4693.777 kb on - strand, within QEN71_RS21160at 4693.777 kb on - strand, within QEN71_RS21160at 4693.777 kb on - strand, within QEN71_RS21160at 4693.920 kb on + strand, within QEN71_RS21160at 4693.920 kb on + strand, within QEN71_RS21160at 4693.921 kb on - strand, within QEN71_RS21160at 4693.921 kb on - strand, within QEN71_RS21160at 4693.921 kb on - strand, within QEN71_RS21160at 4694.031 kb on + strand, within QEN71_RS21160at 4694.065 kb on - strand, within QEN71_RS21160at 4694.089 kb on + strand, within QEN71_RS21160at 4694.282 kb on + strand, within QEN71_RS21160at 4694.282 kb on + strand, within QEN71_RS21160at 4694.588 kb on - strand, within QEN71_RS21165

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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4,691,373 + -1.0
4,691,373 + +0.5
4,691,466 + QEN71_RS21150 0.10 -0.2
4,691,466 + QEN71_RS21150 0.10 -0.5
4,691,467 - QEN71_RS21150 0.10 -0.2
4,691,467 - QEN71_RS21150 0.10 -0.8
4,691,524 - QEN71_RS21150 0.17 -0.3
4,691,595 + QEN71_RS21150 0.25 +0.0
4,691,595 + QEN71_RS21150 0.25 -0.5
4,691,595 + QEN71_RS21150 0.25 -1.7
4,691,595 + QEN71_RS21150 0.25 -1.6
4,691,595 + QEN71_RS21150 0.25 +0.0
4,691,595 + QEN71_RS21150 0.25 +0.0
4,691,595 + QEN71_RS21150 0.25 -0.6
4,691,596 - QEN71_RS21150 0.25 +1.2
4,691,596 - QEN71_RS21150 0.25 -0.1
4,691,596 - QEN71_RS21150 0.25 -0.8
4,691,596 - QEN71_RS21150 0.25 -0.6
4,691,596 - QEN71_RS21150 0.25 -0.7
4,691,596 - QEN71_RS21150 0.25 +0.1
4,691,596 - QEN71_RS21150 0.25 -0.3
4,691,709 + QEN71_RS21150 0.37 -0.4
4,692,308 + -0.4
4,692,309 - +0.1
4,692,309 - +0.8
4,692,322 + +0.8
4,692,387 + +1.8
4,692,387 + +0.2
4,692,387 + -0.9
4,692,388 - -0.8
4,692,388 - -1.2
4,692,388 - -0.3
4,692,388 - -0.8
4,692,744 + QEN71_RS21155 0.31 -0.9
4,692,744 + QEN71_RS21155 0.31 -0.2
4,692,744 + QEN71_RS21155 0.31 -0.1
4,692,744 + QEN71_RS21155 0.31 -0.9
4,692,744 + QEN71_RS21155 0.31 -1.4
4,692,745 - QEN71_RS21155 0.31 -1.0
4,692,745 - QEN71_RS21155 0.31 -1.3
4,692,745 - QEN71_RS21155 0.31 -1.3
4,692,745 - QEN71_RS21155 0.31 -1.0
4,693,135 - QEN71_RS21155 0.62 -1.6
4,693,629 + -0.2
4,693,629 + -0.8
4,693,629 + -1.7
4,693,630 - -0.2
4,693,630 - -0.1
4,693,630 - +1.8
4,693,630 - +1.0
4,693,630 - -1.6
4,693,630 - +0.2
4,693,635 + -0.1
4,693,635 + +0.2
4,693,636 - -0.6
4,693,678 + +1.0
4,693,680 + +0.5
4,693,681 - -0.8
4,693,704 + +0.4
4,693,704 + -0.3
4,693,705 - -0.2
4,693,775 - QEN71_RS21160 0.18 +0.8
4,693,776 + QEN71_RS21160 0.19 +0.0
4,693,776 + QEN71_RS21160 0.19 -0.6
4,693,776 + QEN71_RS21160 0.19 +1.1
4,693,776 + QEN71_RS21160 0.19 +0.1
4,693,776 + QEN71_RS21160 0.19 -0.2
4,693,777 - QEN71_RS21160 0.19 -1.1
4,693,777 - QEN71_RS21160 0.19 -0.6
4,693,777 - QEN71_RS21160 0.19 -0.1
4,693,777 - QEN71_RS21160 0.19 +0.8
4,693,777 - QEN71_RS21160 0.19 +0.2
4,693,777 - QEN71_RS21160 0.19 -0.2
4,693,777 - QEN71_RS21160 0.19 +0.2
4,693,777 - QEN71_RS21160 0.19 +0.6
4,693,920 + QEN71_RS21160 0.37 -0.8
4,693,920 + QEN71_RS21160 0.37 -0.6
4,693,921 - QEN71_RS21160 0.38 +0.4
4,693,921 - QEN71_RS21160 0.38 +0.0
4,693,921 - QEN71_RS21160 0.38 -0.8
4,694,031 + QEN71_RS21160 0.52 -0.7
4,694,065 - QEN71_RS21160 0.56 -2.3
4,694,089 + QEN71_RS21160 0.59 +0.4
4,694,282 + QEN71_RS21160 0.85 -0.4
4,694,282 + QEN71_RS21160 0.85 -1.2
4,694,588 - QEN71_RS21165 0.14 +0.4

Or see this region's nucleotide sequence