Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS20440 and QEN71_RS20445 are separated by 76 nucleotides QEN71_RS20445 and QEN71_RS20450 are separated by 148 nucleotides QEN71_RS20450 and QEN71_RS20455 are separated by 220 nucleotides
QEN71_RS20440: QEN71_RS20440 - aldehyde dehydrogenase family protein, at 4,541,459 to 4,542,910
_RS20440
QEN71_RS20445: QEN71_RS20445 - LysE family translocator, at 4,542,987 to 4,543,610
_RS20445
QEN71_RS20450: QEN71_RS20450 - hypothetical protein, at 4,543,759 to 4,544,316
_RS20450
QEN71_RS20455: QEN71_RS20455 - hypothetical protein, at 4,544,537 to 4,545,325
_RS20455
Position (kb) 4543
4544
4545 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4542.782 kb on + strand at 4542.782 kb on + strand at 4542.782 kb on + strand at 4542.782 kb on + strand at 4542.783 kb on - strand at 4542.783 kb on - strand at 4542.788 kb on + strand at 4542.788 kb on + strand at 4542.788 kb on + strand at 4542.908 kb on + strand at 4542.909 kb on - strand at 4542.909 kb on - strand at 4542.961 kb on + strand at 4542.967 kb on + strand at 4542.968 kb on - strand at 4542.968 kb on - strand at 4543.118 kb on - strand, within QEN71_RS20445 at 4543.367 kb on - strand, within QEN71_RS20445 at 4543.367 kb on - strand, within QEN71_RS20445 at 4543.760 kb on + strand at 4543.761 kb on - strand at 4543.884 kb on + strand, within QEN71_RS20450 at 4543.934 kb on + strand, within QEN71_RS20450 at 4543.935 kb on - strand, within QEN71_RS20450 at 4544.138 kb on + strand, within QEN71_RS20450 at 4544.168 kb on + strand, within QEN71_RS20450 at 4544.456 kb on + strand at 4544.456 kb on + strand at 4544.468 kb on + strand at 4544.469 kb on - strand at 4544.469 kb on - strand at 4544.469 kb on - strand at 4544.591 kb on + strand at 4544.754 kb on - strand, within QEN71_RS20455 at 4544.755 kb on + strand, within QEN71_RS20455 at 4544.755 kb on + strand, within QEN71_RS20455 at 4544.755 kb on + strand, within QEN71_RS20455 at 4544.756 kb on - strand, within QEN71_RS20455 at 4544.847 kb on + strand, within QEN71_RS20455 at 4544.848 kb on - strand, within QEN71_RS20455 at 4544.848 kb on - strand, within QEN71_RS20455 at 4544.893 kb on + strand, within QEN71_RS20455 at 4545.071 kb on + strand, within QEN71_RS20455 at 4545.071 kb on + strand, within QEN71_RS20455 at 4545.158 kb on + strand, within QEN71_RS20455 at 4545.159 kb on - strand, within QEN71_RS20455 at 4545.173 kb on + strand, within QEN71_RS20455 at 4545.223 kb on + strand, within QEN71_RS20455 at 4545.254 kb on + strand at 4545.254 kb on + strand at 4545.254 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 4,542,782 + -0.2 4,542,782 + +0.2 4,542,782 + +0.0 4,542,782 + -0.0 4,542,783 - +0.1 4,542,783 - -0.4 4,542,788 + -1.0 4,542,788 + -0.1 4,542,788 + +0.4 4,542,908 + +0.1 4,542,909 - -0.5 4,542,909 - -0.3 4,542,961 + -1.0 4,542,967 + +2.4 4,542,968 - -0.2 4,542,968 - -0.6 4,543,118 - QEN71_RS20445 0.21 +0.1 4,543,367 - QEN71_RS20445 0.61 +0.8 4,543,367 - QEN71_RS20445 0.61 -0.1 4,543,760 + -0.1 4,543,761 - -0.5 4,543,884 + QEN71_RS20450 0.22 -0.2 4,543,934 + QEN71_RS20450 0.31 -0.9 4,543,935 - QEN71_RS20450 0.32 +1.8 4,544,138 + QEN71_RS20450 0.68 +1.2 4,544,168 + QEN71_RS20450 0.73 -0.8 4,544,456 + -0.3 4,544,456 + -1.6 4,544,468 + +1.3 4,544,469 - -0.1 4,544,469 - -0.4 4,544,469 - -0.4 4,544,591 + +0.6 4,544,754 - QEN71_RS20455 0.28 -2.3 4,544,755 + QEN71_RS20455 0.28 -0.2 4,544,755 + QEN71_RS20455 0.28 -0.7 4,544,755 + QEN71_RS20455 0.28 -0.1 4,544,756 - QEN71_RS20455 0.28 -0.0 4,544,847 + QEN71_RS20455 0.39 +0.4 4,544,848 - QEN71_RS20455 0.39 -0.1 4,544,848 - QEN71_RS20455 0.39 -0.2 4,544,893 + QEN71_RS20455 0.45 -0.1 4,545,071 + QEN71_RS20455 0.68 +0.4 4,545,071 + QEN71_RS20455 0.68 +0.0 4,545,158 + QEN71_RS20455 0.79 +0.6 4,545,159 - QEN71_RS20455 0.79 -0.5 4,545,173 + QEN71_RS20455 0.81 -0.3 4,545,223 + QEN71_RS20455 0.87 +0.6 4,545,254 + +0.3 4,545,254 + +0.5 4,545,254 + -1.4
Or see this region's nucleotide sequence