Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS15810 and QEN71_RS15815 overlap by 4 nucleotides QEN71_RS15815 and QEN71_RS15820 are separated by 2 nucleotides
QEN71_RS15810: QEN71_RS15810 - iron-siderophore ABC transporter substrate-binding protein, at 3,527,955 to 3,528,956
_RS15810
QEN71_RS15815: QEN71_RS15815 - siderophore-iron reductase FhuF, at 3,528,953 to 3,529,753
_RS15815
QEN71_RS15820: QEN71_RS15820 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 3,529,756 to 3,531,870
_RS15820
Position (kb)
3528
3529
3530 Strain fitness (log2 ratio)
-2
-1
0
1 at 3527.976 kb on - strand at 3527.976 kb on - strand at 3528.171 kb on + strand, within QEN71_RS15810 at 3528.564 kb on - strand, within QEN71_RS15810 at 3528.564 kb on - strand, within QEN71_RS15810 at 3528.715 kb on + strand, within QEN71_RS15810 at 3528.959 kb on + strand at 3528.959 kb on + strand at 3528.960 kb on - strand at 3528.960 kb on - strand at 3528.960 kb on - strand at 3529.002 kb on - strand at 3529.389 kb on + strand, within QEN71_RS15815 at 3529.390 kb on - strand, within QEN71_RS15815 at 3529.390 kb on - strand, within QEN71_RS15815 at 3529.390 kb on - strand, within QEN71_RS15815 at 3529.463 kb on + strand, within QEN71_RS15815 at 3529.464 kb on - strand, within QEN71_RS15815 at 3529.506 kb on + strand, within QEN71_RS15815 at 3529.507 kb on - strand, within QEN71_RS15815 at 3529.509 kb on + strand, within QEN71_RS15815 at 3529.510 kb on - strand, within QEN71_RS15815 at 3529.696 kb on - strand at 3529.696 kb on - strand at 3529.811 kb on + strand at 3529.938 kb on + strand at 3529.938 kb on + strand at 3529.938 kb on + strand at 3529.938 kb on + strand at 3529.938 kb on + strand at 3529.939 kb on - strand at 3529.939 kb on - strand at 3529.939 kb on - strand at 3529.939 kb on - strand at 3530.210 kb on + strand, within QEN71_RS15820 at 3530.210 kb on + strand, within QEN71_RS15820 at 3530.210 kb on + strand, within QEN71_RS15820 at 3530.210 kb on + strand, within QEN71_RS15820 at 3530.211 kb on - strand, within QEN71_RS15820 at 3530.282 kb on - strand, within QEN71_RS15820 at 3530.293 kb on + strand, within QEN71_RS15820 at 3530.306 kb on - strand, within QEN71_RS15820 at 3530.379 kb on + strand, within QEN71_RS15820 at 3530.379 kb on + strand, within QEN71_RS15820 at 3530.383 kb on - strand, within QEN71_RS15820 at 3530.383 kb on - strand, within QEN71_RS15820 at 3530.690 kb on + strand, within QEN71_RS15820
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 3,527,976 - -0.3 3,527,976 - +0.4 3,528,171 + QEN71_RS15810 0.22 -0.9 3,528,564 - QEN71_RS15810 0.61 -0.1 3,528,564 - QEN71_RS15810 0.61 -0.2 3,528,715 + QEN71_RS15810 0.76 +0.5 3,528,959 + -1.8 3,528,959 + -1.9 3,528,960 - +0.2 3,528,960 - -1.6 3,528,960 - -0.4 3,529,002 - -0.4 3,529,389 + QEN71_RS15815 0.54 +0.1 3,529,390 - QEN71_RS15815 0.55 -1.7 3,529,390 - QEN71_RS15815 0.55 -1.8 3,529,390 - QEN71_RS15815 0.55 +1.4 3,529,463 + QEN71_RS15815 0.64 -1.3 3,529,464 - QEN71_RS15815 0.64 -1.6 3,529,506 + QEN71_RS15815 0.69 -2.1 3,529,507 - QEN71_RS15815 0.69 -2.4 3,529,509 + QEN71_RS15815 0.69 -1.0 3,529,510 - QEN71_RS15815 0.70 -1.6 3,529,696 - -1.6 3,529,696 - -0.3 3,529,811 + -0.2 3,529,938 + +0.4 3,529,938 + -1.2 3,529,938 + -1.4 3,529,938 + +0.2 3,529,938 + -1.7 3,529,939 - -0.0 3,529,939 - -0.7 3,529,939 - -0.8 3,529,939 - +0.0 3,530,210 + QEN71_RS15820 0.21 +0.4 3,530,210 + QEN71_RS15820 0.21 -1.5 3,530,210 + QEN71_RS15820 0.21 -0.8 3,530,210 + QEN71_RS15820 0.21 -1.8 3,530,211 - QEN71_RS15820 0.22 -1.1 3,530,282 - QEN71_RS15820 0.25 -1.5 3,530,293 + QEN71_RS15820 0.25 -0.6 3,530,306 - QEN71_RS15820 0.26 -0.9 3,530,379 + QEN71_RS15820 0.29 -1.8 3,530,379 + QEN71_RS15820 0.29 -2.1 3,530,383 - QEN71_RS15820 0.30 -0.4 3,530,383 - QEN71_RS15820 0.30 -1.6 3,530,690 + QEN71_RS15820 0.44 -1.6
Or see this region's nucleotide sequence