Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS15805

Experiment: Filtered_supernatant_MT81_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS15800 and QEN71_RS15805 are separated by 264 nucleotidesQEN71_RS15805 and QEN71_RS15810 are separated by 87 nucleotides QEN71_RS15800: QEN71_RS15800 - non-ribosomal peptide synthetase, at 3,516,207 to 3,525,809 _RS15800 QEN71_RS15805: QEN71_RS15805 - cyclic peptide export ABC transporter, at 3,526,074 to 3,527,867 _RS15805 QEN71_RS15810: QEN71_RS15810 - iron-siderophore ABC transporter substrate-binding protein, at 3,527,955 to 3,528,956 _RS15810 Position (kb) 3526 3527 3528Strain fitness (log2 ratio) -3 -2 -1 0 1at 3525.343 kb on + strandat 3525.344 kb on - strandat 3525.344 kb on - strandat 3525.344 kb on - strandat 3525.838 kb on - strandat 3525.935 kb on + strandat 3526.014 kb on - strandat 3526.014 kb on - strandat 3526.551 kb on + strand, within QEN71_RS15805at 3526.693 kb on - strand, within QEN71_RS15805at 3526.824 kb on + strand, within QEN71_RS15805at 3526.825 kb on - strand, within QEN71_RS15805at 3526.825 kb on - strand, within QEN71_RS15805at 3527.035 kb on + strand, within QEN71_RS15805at 3527.142 kb on + strand, within QEN71_RS15805at 3527.277 kb on + strand, within QEN71_RS15805at 3527.513 kb on + strand, within QEN71_RS15805at 3527.574 kb on + strand, within QEN71_RS15805at 3527.595 kb on + strand, within QEN71_RS15805at 3527.595 kb on + strand, within QEN71_RS15805at 3527.595 kb on + strand, within QEN71_RS15805at 3527.596 kb on - strand, within QEN71_RS15805at 3527.596 kb on - strand, within QEN71_RS15805at 3527.888 kb on + strandat 3527.889 kb on - strandat 3527.976 kb on - strandat 3527.976 kb on - strandat 3528.171 kb on + strand, within QEN71_RS15810at 3528.564 kb on - strand, within QEN71_RS15810at 3528.564 kb on - strand, within QEN71_RS15810at 3528.715 kb on + strand, within QEN71_RS15810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
remove
3,525,343 + +0.9
3,525,344 - +0.5
3,525,344 - +0.0
3,525,344 - +0.2
3,525,838 - -0.7
3,525,935 + -0.2
3,526,014 - -0.8
3,526,014 - +0.8
3,526,551 + QEN71_RS15805 0.27 -1.8
3,526,693 - QEN71_RS15805 0.35 -2.0
3,526,824 + QEN71_RS15805 0.42 -2.7
3,526,825 - QEN71_RS15805 0.42 -0.2
3,526,825 - QEN71_RS15805 0.42 -3.1
3,527,035 + QEN71_RS15805 0.54 -1.8
3,527,142 + QEN71_RS15805 0.60 -1.7
3,527,277 + QEN71_RS15805 0.67 -1.8
3,527,513 + QEN71_RS15805 0.80 -1.3
3,527,574 + QEN71_RS15805 0.84 -2.6
3,527,595 + QEN71_RS15805 0.85 -2.8
3,527,595 + QEN71_RS15805 0.85 -1.6
3,527,595 + QEN71_RS15805 0.85 -0.3
3,527,596 - QEN71_RS15805 0.85 -1.6
3,527,596 - QEN71_RS15805 0.85 -1.7
3,527,888 + -1.1
3,527,889 - +0.3
3,527,976 - -0.3
3,527,976 - +0.4
3,528,171 + QEN71_RS15810 0.22 -0.9
3,528,564 - QEN71_RS15810 0.61 -0.1
3,528,564 - QEN71_RS15810 0.61 -0.2
3,528,715 + QEN71_RS15810 0.76 +0.5

Or see this region's nucleotide sequence