Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS15390 and QEN71_RS15395 are separated by 30 nucleotides QEN71_RS15395 and QEN71_RS15400 overlap by 4 nucleotides QEN71_RS15400 and QEN71_RS15405 are separated by 37 nucleotides QEN71_RS15405 and QEN71_RS15410 are separated by 14 nucleotides
QEN71_RS15390: QEN71_RS15390 - putative urea ABC transporter substrate-binding protein, at 3,424,426 to 3,425,493
_RS15390
QEN71_RS15395: QEN71_RS15395 - ABC transporter permease subunit, at 3,425,524 to 3,426,339
_RS15395
QEN71_RS15400: QEN71_RS15400 - ABC transporter ATP-binding protein, at 3,426,336 to 3,427,109
_RS15400
QEN71_RS15405: QEN71_RS15405 - urea carboxylase-associated family protein, at 3,427,147 to 3,427,854
_RS15405
QEN71_RS15410: QEN71_RS15410 - urea carboxylase-associated family protein, at 3,427,869 to 3,428,513
_RS15410
Position (kb)
3426
3427
3428 Strain fitness (log2 ratio)
-2
-1
0
1 at 3425.461 kb on + strand at 3425.461 kb on + strand at 3425.461 kb on + strand at 3425.461 kb on + strand at 3425.462 kb on - strand at 3425.462 kb on - strand at 3425.462 kb on - strand at 3425.462 kb on - strand at 3425.462 kb on - strand at 3425.462 kb on - strand at 3425.606 kb on - strand, within QEN71_RS15395 at 3425.696 kb on - strand, within QEN71_RS15395 at 3425.873 kb on + strand, within QEN71_RS15395 at 3425.873 kb on + strand, within QEN71_RS15395 at 3425.873 kb on + strand, within QEN71_RS15395 at 3425.967 kb on + strand, within QEN71_RS15395 at 3425.968 kb on - strand, within QEN71_RS15395 at 3426.214 kb on + strand, within QEN71_RS15395 at 3426.215 kb on - strand, within QEN71_RS15395 at 3426.241 kb on + strand, within QEN71_RS15395 at 3426.241 kb on + strand, within QEN71_RS15395 at 3426.242 kb on - strand, within QEN71_RS15395 at 3426.319 kb on + strand at 3426.320 kb on - strand at 3426.738 kb on + strand, within QEN71_RS15400 at 3427.027 kb on - strand, within QEN71_RS15400 at 3427.462 kb on + strand, within QEN71_RS15405 at 3427.463 kb on - strand, within QEN71_RS15405 at 3427.502 kb on - strand, within QEN71_RS15405 at 3427.654 kb on + strand, within QEN71_RS15405 at 3427.654 kb on + strand, within QEN71_RS15405 at 3427.655 kb on - strand, within QEN71_RS15405 at 3427.666 kb on + strand, within QEN71_RS15405 at 3427.732 kb on + strand, within QEN71_RS15405 at 3427.798 kb on - strand at 3427.798 kb on - strand at 3428.029 kb on - strand, within QEN71_RS15410
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 3,425,461 + +0.0 3,425,461 + -0.6 3,425,461 + +0.5 3,425,461 + +1.1 3,425,462 - -0.6 3,425,462 - -0.8 3,425,462 - -0.1 3,425,462 - -0.5 3,425,462 - -0.3 3,425,462 - +0.3 3,425,606 - QEN71_RS15395 0.10 -0.9 3,425,696 - QEN71_RS15395 0.21 +0.2 3,425,873 + QEN71_RS15395 0.43 -0.1 3,425,873 + QEN71_RS15395 0.43 +0.1 3,425,873 + QEN71_RS15395 0.43 +0.7 3,425,967 + QEN71_RS15395 0.54 -0.5 3,425,968 - QEN71_RS15395 0.54 -0.3 3,426,214 + QEN71_RS15395 0.85 +0.1 3,426,215 - QEN71_RS15395 0.85 -0.1 3,426,241 + QEN71_RS15395 0.88 -0.4 3,426,241 + QEN71_RS15395 0.88 -0.3 3,426,242 - QEN71_RS15395 0.88 +0.6 3,426,319 + -0.7 3,426,320 - -0.4 3,426,738 + QEN71_RS15400 0.52 +0.4 3,427,027 - QEN71_RS15400 0.89 -1.2 3,427,462 + QEN71_RS15405 0.44 +0.4 3,427,463 - QEN71_RS15405 0.45 +0.6 3,427,502 - QEN71_RS15405 0.50 +0.2 3,427,654 + QEN71_RS15405 0.72 +0.7 3,427,654 + QEN71_RS15405 0.72 +0.2 3,427,655 - QEN71_RS15405 0.72 -0.3 3,427,666 + QEN71_RS15405 0.73 +1.0 3,427,732 + QEN71_RS15405 0.83 -2.1 3,427,798 - +0.6 3,427,798 - -0.6 3,428,029 - QEN71_RS15410 0.25 -0.5
Or see this region's nucleotide sequence