Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS15400

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS15390 and QEN71_RS15395 are separated by 30 nucleotidesQEN71_RS15395 and QEN71_RS15400 overlap by 4 nucleotidesQEN71_RS15400 and QEN71_RS15405 are separated by 37 nucleotidesQEN71_RS15405 and QEN71_RS15410 are separated by 14 nucleotides QEN71_RS15390: QEN71_RS15390 - putative urea ABC transporter substrate-binding protein, at 3,424,426 to 3,425,493 _RS15390 QEN71_RS15395: QEN71_RS15395 - ABC transporter permease subunit, at 3,425,524 to 3,426,339 _RS15395 QEN71_RS15400: QEN71_RS15400 - ABC transporter ATP-binding protein, at 3,426,336 to 3,427,109 _RS15400 QEN71_RS15405: QEN71_RS15405 - urea carboxylase-associated family protein, at 3,427,147 to 3,427,854 _RS15405 QEN71_RS15410: QEN71_RS15410 - urea carboxylase-associated family protein, at 3,427,869 to 3,428,513 _RS15410 Position (kb) 3426 3427 3428Strain fitness (log2 ratio) -2 -1 0 1at 3425.461 kb on + strandat 3425.461 kb on + strandat 3425.461 kb on + strandat 3425.461 kb on + strandat 3425.462 kb on - strandat 3425.462 kb on - strandat 3425.462 kb on - strandat 3425.462 kb on - strandat 3425.462 kb on - strandat 3425.462 kb on - strandat 3425.606 kb on - strand, within QEN71_RS15395at 3425.696 kb on - strand, within QEN71_RS15395at 3425.873 kb on + strand, within QEN71_RS15395at 3425.873 kb on + strand, within QEN71_RS15395at 3425.873 kb on + strand, within QEN71_RS15395at 3425.967 kb on + strand, within QEN71_RS15395at 3425.968 kb on - strand, within QEN71_RS15395at 3426.214 kb on + strand, within QEN71_RS15395at 3426.215 kb on - strand, within QEN71_RS15395at 3426.241 kb on + strand, within QEN71_RS15395at 3426.241 kb on + strand, within QEN71_RS15395at 3426.242 kb on - strand, within QEN71_RS15395at 3426.319 kb on + strandat 3426.320 kb on - strandat 3426.738 kb on + strand, within QEN71_RS15400at 3427.027 kb on - strand, within QEN71_RS15400at 3427.462 kb on + strand, within QEN71_RS15405at 3427.463 kb on - strand, within QEN71_RS15405at 3427.502 kb on - strand, within QEN71_RS15405at 3427.654 kb on + strand, within QEN71_RS15405at 3427.654 kb on + strand, within QEN71_RS15405at 3427.655 kb on - strand, within QEN71_RS15405at 3427.666 kb on + strand, within QEN71_RS15405at 3427.732 kb on + strand, within QEN71_RS15405at 3427.798 kb on - strandat 3427.798 kb on - strandat 3428.029 kb on - strand, within QEN71_RS15410

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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3,425,461 + +0.0
3,425,461 + -0.6
3,425,461 + +0.5
3,425,461 + +1.1
3,425,462 - -0.6
3,425,462 - -0.8
3,425,462 - -0.1
3,425,462 - -0.5
3,425,462 - -0.3
3,425,462 - +0.3
3,425,606 - QEN71_RS15395 0.10 -0.9
3,425,696 - QEN71_RS15395 0.21 +0.2
3,425,873 + QEN71_RS15395 0.43 -0.1
3,425,873 + QEN71_RS15395 0.43 +0.1
3,425,873 + QEN71_RS15395 0.43 +0.7
3,425,967 + QEN71_RS15395 0.54 -0.5
3,425,968 - QEN71_RS15395 0.54 -0.3
3,426,214 + QEN71_RS15395 0.85 +0.1
3,426,215 - QEN71_RS15395 0.85 -0.1
3,426,241 + QEN71_RS15395 0.88 -0.4
3,426,241 + QEN71_RS15395 0.88 -0.3
3,426,242 - QEN71_RS15395 0.88 +0.6
3,426,319 + -0.7
3,426,320 - -0.4
3,426,738 + QEN71_RS15400 0.52 +0.4
3,427,027 - QEN71_RS15400 0.89 -1.2
3,427,462 + QEN71_RS15405 0.44 +0.4
3,427,463 - QEN71_RS15405 0.45 +0.6
3,427,502 - QEN71_RS15405 0.50 +0.2
3,427,654 + QEN71_RS15405 0.72 +0.7
3,427,654 + QEN71_RS15405 0.72 +0.2
3,427,655 - QEN71_RS15405 0.72 -0.3
3,427,666 + QEN71_RS15405 0.73 +1.0
3,427,732 + QEN71_RS15405 0.83 -2.1
3,427,798 - +0.6
3,427,798 - -0.6
3,428,029 - QEN71_RS15410 0.25 -0.5

Or see this region's nucleotide sequence