Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS12755

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS12745 and QEN71_RS12750 are separated by 74 nucleotidesQEN71_RS12750 and QEN71_RS12755 are separated by 64 nucleotidesQEN71_RS12755 and QEN71_RS12760 are separated by 422 nucleotides QEN71_RS12745: QEN71_RS12745 - ectoine/hydroxyectoine ABC transporter permease subunit EhuC, at 2,851,027 to 2,851,686 _RS12745 QEN71_RS12750: QEN71_RS12750 - ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB, at 2,851,761 to 2,852,600 _RS12750 QEN71_RS12755: QEN71_RS12755 - ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA, at 2,852,665 to 2,853,567 _RS12755 QEN71_RS12760: QEN71_RS12760 - ectoine hydrolase DoeA, at 2,853,990 to 2,855,210 _RS12760 Position (kb) 2852 2853 2854Strain fitness (log2 ratio) -1 0 1 2at 2851.730 kb on - strandat 2851.740 kb on - strandat 2852.192 kb on - strand, within QEN71_RS12750at 2852.263 kb on + strand, within QEN71_RS12750at 2852.263 kb on + strand, within QEN71_RS12750at 2852.737 kb on + strandat 2852.738 kb on - strandat 2853.634 kb on - strandat 2853.783 kb on + strandat 2853.784 kb on - strandat 2853.787 kb on + strandat 2853.787 kb on + strandat 2853.834 kb on - strandat 2853.859 kb on - strandat 2853.890 kb on - strandat 2853.930 kb on + strandat 2853.959 kb on - strandat 2854.161 kb on + strand, within QEN71_RS12760at 2854.180 kb on - strand, within QEN71_RS12760at 2854.287 kb on - strand, within QEN71_RS12760at 2854.308 kb on + strand, within QEN71_RS12760at 2854.308 kb on + strand, within QEN71_RS12760at 2854.410 kb on + strand, within QEN71_RS12760at 2854.410 kb on + strand, within QEN71_RS12760at 2854.530 kb on + strand, within QEN71_RS12760

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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2,851,730 - -0.2
2,851,740 - -0.9
2,852,192 - QEN71_RS12750 0.51 -1.0
2,852,263 + QEN71_RS12750 0.60 -0.1
2,852,263 + QEN71_RS12750 0.60 +0.3
2,852,737 + +0.6
2,852,738 - -0.3
2,853,634 - -1.4
2,853,783 + -0.8
2,853,784 - -0.2
2,853,787 + -0.0
2,853,787 + +0.6
2,853,834 - +0.8
2,853,859 - -0.1
2,853,890 - +0.0
2,853,930 + -1.2
2,853,959 - +0.3
2,854,161 + QEN71_RS12760 0.14 -0.3
2,854,180 - QEN71_RS12760 0.16 +0.4
2,854,287 - QEN71_RS12760 0.24 -1.6
2,854,308 + QEN71_RS12760 0.26 +0.6
2,854,308 + QEN71_RS12760 0.26 +1.8
2,854,410 + QEN71_RS12760 0.34 +0.5
2,854,410 + QEN71_RS12760 0.34 +0.4
2,854,530 + QEN71_RS12760 0.44 +0.0

Or see this region's nucleotide sequence