Experiment: Filtered_supernatant_MT81_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS11805 and QEN71_RS11810 are separated by 290 nucleotides QEN71_RS11810 and QEN71_RS11815 are separated by 11 nucleotides QEN71_RS11815 and QEN71_RS11820 overlap by 1 nucleotides
QEN71_RS11805: QEN71_RS11805 - LLM class flavin-dependent oxidoreductase, at 2,628,679 to 2,629,740
_RS11805
QEN71_RS11810: QEN71_RS11810 - LLM class flavin-dependent oxidoreductase, at 2,630,031 to 2,631,107
_RS11810
QEN71_RS11815: QEN71_RS11815 - class II aldolase/adducin family protein, at 2,631,119 to 2,631,934
_RS11815
QEN71_RS11820: QEN71_RS11820 - cysteine dioxygenase, at 2,631,934 to 2,632,530
_RS11820
Position (kb)
2630
2631
2632 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2629.103 kb on + strand, within QEN71_RS11805 at 2629.182 kb on - strand, within QEN71_RS11805 at 2629.182 kb on - strand, within QEN71_RS11805 at 2629.277 kb on - strand, within QEN71_RS11805 at 2629.280 kb on - strand, within QEN71_RS11805 at 2629.319 kb on + strand, within QEN71_RS11805 at 2629.466 kb on + strand, within QEN71_RS11805 at 2629.466 kb on + strand, within QEN71_RS11805 at 2629.467 kb on - strand, within QEN71_RS11805 at 2629.467 kb on - strand, within QEN71_RS11805 at 2629.467 kb on - strand, within QEN71_RS11805 at 2629.467 kb on - strand, within QEN71_RS11805 at 2629.658 kb on + strand at 2629.763 kb on - strand at 2629.763 kb on - strand at 2629.766 kb on + strand at 2629.820 kb on + strand at 2629.858 kb on + strand at 2629.892 kb on - strand at 2629.936 kb on + strand at 2629.937 kb on - strand at 2630.027 kb on + strand at 2630.028 kb on - strand at 2630.028 kb on - strand at 2630.215 kb on - strand, within QEN71_RS11810 at 2630.427 kb on + strand, within QEN71_RS11810 at 2630.980 kb on - strand, within QEN71_RS11810 at 2631.028 kb on + strand at 2631.045 kb on + strand at 2631.307 kb on + strand, within QEN71_RS11815 at 2631.307 kb on + strand, within QEN71_RS11815 at 2631.525 kb on - strand, within QEN71_RS11815 at 2631.638 kb on - strand, within QEN71_RS11815 at 2631.749 kb on + strand, within QEN71_RS11815 at 2631.749 kb on + strand, within QEN71_RS11815 at 2631.750 kb on - strand, within QEN71_RS11815 at 2631.893 kb on + strand at 2631.894 kb on - strand at 2632.099 kb on + strand, within QEN71_RS11820
Per-strain Table
Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB remove 2,629,103 + QEN71_RS11805 0.40 +0.3 2,629,182 - QEN71_RS11805 0.47 +0.4 2,629,182 - QEN71_RS11805 0.47 -0.5 2,629,277 - QEN71_RS11805 0.56 +0.1 2,629,280 - QEN71_RS11805 0.57 -1.0 2,629,319 + QEN71_RS11805 0.60 +1.1 2,629,466 + QEN71_RS11805 0.74 -1.1 2,629,466 + QEN71_RS11805 0.74 -0.9 2,629,467 - QEN71_RS11805 0.74 -0.5 2,629,467 - QEN71_RS11805 0.74 +0.5 2,629,467 - QEN71_RS11805 0.74 +0.6 2,629,467 - QEN71_RS11805 0.74 +0.3 2,629,658 + +0.8 2,629,763 - -0.1 2,629,763 - -0.0 2,629,766 + -0.3 2,629,820 + +0.1 2,629,858 + +0.8 2,629,892 - +1.3 2,629,936 + -0.2 2,629,937 - -0.2 2,630,027 + +0.4 2,630,028 - +0.2 2,630,028 - -0.3 2,630,215 - QEN71_RS11810 0.17 -0.4 2,630,427 + QEN71_RS11810 0.37 -1.9 2,630,980 - QEN71_RS11810 0.88 -0.7 2,631,028 + -1.8 2,631,045 + +1.6 2,631,307 + QEN71_RS11815 0.23 +0.2 2,631,307 + QEN71_RS11815 0.23 -0.6 2,631,525 - QEN71_RS11815 0.50 -1.2 2,631,638 - QEN71_RS11815 0.64 -0.3 2,631,749 + QEN71_RS11815 0.77 -0.1 2,631,749 + QEN71_RS11815 0.77 +1.4 2,631,750 - QEN71_RS11815 0.77 -1.0 2,631,893 + +0.1 2,631,894 - +2.8 2,632,099 + QEN71_RS11820 0.28 +1.1
Or see this region's nucleotide sequence