Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS11810

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS11805 and QEN71_RS11810 are separated by 290 nucleotidesQEN71_RS11810 and QEN71_RS11815 are separated by 11 nucleotidesQEN71_RS11815 and QEN71_RS11820 overlap by 1 nucleotides QEN71_RS11805: QEN71_RS11805 - LLM class flavin-dependent oxidoreductase, at 2,628,679 to 2,629,740 _RS11805 QEN71_RS11810: QEN71_RS11810 - LLM class flavin-dependent oxidoreductase, at 2,630,031 to 2,631,107 _RS11810 QEN71_RS11815: QEN71_RS11815 - class II aldolase/adducin family protein, at 2,631,119 to 2,631,934 _RS11815 QEN71_RS11820: QEN71_RS11820 - cysteine dioxygenase, at 2,631,934 to 2,632,530 _RS11820 Position (kb) 2630 2631 2632Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2629.103 kb on + strand, within QEN71_RS11805at 2629.182 kb on - strand, within QEN71_RS11805at 2629.182 kb on - strand, within QEN71_RS11805at 2629.277 kb on - strand, within QEN71_RS11805at 2629.280 kb on - strand, within QEN71_RS11805at 2629.319 kb on + strand, within QEN71_RS11805at 2629.466 kb on + strand, within QEN71_RS11805at 2629.466 kb on + strand, within QEN71_RS11805at 2629.467 kb on - strand, within QEN71_RS11805at 2629.467 kb on - strand, within QEN71_RS11805at 2629.467 kb on - strand, within QEN71_RS11805at 2629.467 kb on - strand, within QEN71_RS11805at 2629.658 kb on + strandat 2629.763 kb on - strandat 2629.763 kb on - strandat 2629.766 kb on + strandat 2629.820 kb on + strandat 2629.858 kb on + strandat 2629.892 kb on - strandat 2629.936 kb on + strandat 2629.937 kb on - strandat 2630.027 kb on + strandat 2630.028 kb on - strandat 2630.028 kb on - strandat 2630.215 kb on - strand, within QEN71_RS11810at 2630.427 kb on + strand, within QEN71_RS11810at 2630.980 kb on - strand, within QEN71_RS11810at 2631.028 kb on + strandat 2631.045 kb on + strandat 2631.307 kb on + strand, within QEN71_RS11815at 2631.307 kb on + strand, within QEN71_RS11815at 2631.525 kb on - strand, within QEN71_RS11815at 2631.638 kb on - strand, within QEN71_RS11815at 2631.749 kb on + strand, within QEN71_RS11815at 2631.749 kb on + strand, within QEN71_RS11815at 2631.750 kb on - strand, within QEN71_RS11815at 2631.893 kb on + strandat 2631.894 kb on - strandat 2632.099 kb on + strand, within QEN71_RS11820

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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2,629,103 + QEN71_RS11805 0.40 +0.3
2,629,182 - QEN71_RS11805 0.47 +0.4
2,629,182 - QEN71_RS11805 0.47 -0.5
2,629,277 - QEN71_RS11805 0.56 +0.1
2,629,280 - QEN71_RS11805 0.57 -1.0
2,629,319 + QEN71_RS11805 0.60 +1.1
2,629,466 + QEN71_RS11805 0.74 -1.1
2,629,466 + QEN71_RS11805 0.74 -0.9
2,629,467 - QEN71_RS11805 0.74 -0.5
2,629,467 - QEN71_RS11805 0.74 +0.5
2,629,467 - QEN71_RS11805 0.74 +0.6
2,629,467 - QEN71_RS11805 0.74 +0.3
2,629,658 + +0.8
2,629,763 - -0.1
2,629,763 - -0.0
2,629,766 + -0.3
2,629,820 + +0.1
2,629,858 + +0.8
2,629,892 - +1.3
2,629,936 + -0.2
2,629,937 - -0.2
2,630,027 + +0.4
2,630,028 - +0.2
2,630,028 - -0.3
2,630,215 - QEN71_RS11810 0.17 -0.4
2,630,427 + QEN71_RS11810 0.37 -1.9
2,630,980 - QEN71_RS11810 0.88 -0.7
2,631,028 + -1.8
2,631,045 + +1.6
2,631,307 + QEN71_RS11815 0.23 +0.2
2,631,307 + QEN71_RS11815 0.23 -0.6
2,631,525 - QEN71_RS11815 0.50 -1.2
2,631,638 - QEN71_RS11815 0.64 -0.3
2,631,749 + QEN71_RS11815 0.77 -0.1
2,631,749 + QEN71_RS11815 0.77 +1.4
2,631,750 - QEN71_RS11815 0.77 -1.0
2,631,893 + +0.1
2,631,894 - +2.8
2,632,099 + QEN71_RS11820 0.28 +1.1

Or see this region's nucleotide sequence