Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10310

Experiment: Filtered_supernatant_MT81_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS10295 and QEN71_RS10300 overlap by 8 nucleotidesQEN71_RS10300 and QEN71_RS10305 are separated by 80 nucleotidesQEN71_RS10305 and QEN71_RS10310 are separated by 39 nucleotidesQEN71_RS10310 and QEN71_RS10315 are separated by 4 nucleotides QEN71_RS10295: QEN71_RS10295 - hypothetical protein, at 2,289,236 to 2,290,516 _RS10295 QEN71_RS10300: QEN71_RS10300 - hypothetical protein, at 2,290,509 to 2,291,015 _RS10300 QEN71_RS10305: QEN71_RS10305 - hypothetical protein, at 2,291,096 to 2,291,383 _RS10305 QEN71_RS10310: QEN71_RS10310 - hypothetical protein, at 2,291,423 to 2,292,649 _RS10310 QEN71_RS10315: QEN71_RS10315 - hypothetical protein, at 2,292,654 to 2,294,666 _RS10315 Position (kb) 2291 2292 2293Strain fitness (log2 ratio) -1 0 1at 2290.464 kb on + strandat 2290.466 kb on + strandat 2290.467 kb on - strandat 2290.505 kb on - strandat 2290.511 kb on - strandat 2290.563 kb on - strand, within QEN71_RS10300at 2290.668 kb on + strand, within QEN71_RS10300at 2290.668 kb on + strand, within QEN71_RS10300at 2290.669 kb on - strand, within QEN71_RS10300at 2290.754 kb on + strand, within QEN71_RS10300at 2290.793 kb on + strand, within QEN71_RS10300at 2290.793 kb on + strand, within QEN71_RS10300at 2290.793 kb on + strand, within QEN71_RS10300at 2290.796 kb on - strand, within QEN71_RS10300at 2290.981 kb on - strandat 2291.141 kb on - strand, within QEN71_RS10305at 2291.281 kb on + strand, within QEN71_RS10305at 2291.598 kb on + strand, within QEN71_RS10310at 2291.599 kb on - strand, within QEN71_RS10310at 2291.616 kb on - strand, within QEN71_RS10310at 2291.821 kb on + strand, within QEN71_RS10310at 2291.890 kb on + strand, within QEN71_RS10310at 2292.115 kb on + strand, within QEN71_RS10310at 2292.241 kb on + strand, within QEN71_RS10310at 2292.402 kb on + strand, within QEN71_RS10310at 2292.578 kb on - strandat 2292.622 kb on + strandat 2293.036 kb on + strand, within QEN71_RS10315at 2293.105 kb on + strand, within QEN71_RS10315at 2293.181 kb on + strand, within QEN71_RS10315at 2293.201 kb on + strand, within QEN71_RS10315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
remove
2,290,464 + -0.5
2,290,466 + -0.5
2,290,467 - -1.4
2,290,505 - +0.5
2,290,511 - +0.1
2,290,563 - QEN71_RS10300 0.11 +0.5
2,290,668 + QEN71_RS10300 0.31 -0.4
2,290,668 + QEN71_RS10300 0.31 -0.9
2,290,669 - QEN71_RS10300 0.32 +0.0
2,290,754 + QEN71_RS10300 0.48 +0.7
2,290,793 + QEN71_RS10300 0.56 -1.7
2,290,793 + QEN71_RS10300 0.56 +0.0
2,290,793 + QEN71_RS10300 0.56 -0.4
2,290,796 - QEN71_RS10300 0.57 -1.1
2,290,981 - -1.5
2,291,141 - QEN71_RS10305 0.16 -0.4
2,291,281 + QEN71_RS10305 0.64 +0.5
2,291,598 + QEN71_RS10310 0.14 -0.2
2,291,599 - QEN71_RS10310 0.14 +0.2
2,291,616 - QEN71_RS10310 0.16 -0.8
2,291,821 + QEN71_RS10310 0.32 -1.5
2,291,890 + QEN71_RS10310 0.38 -0.8
2,292,115 + QEN71_RS10310 0.56 -0.8
2,292,241 + QEN71_RS10310 0.67 -0.5
2,292,402 + QEN71_RS10310 0.80 -0.2
2,292,578 - -1.5
2,292,622 + +0.2
2,293,036 + QEN71_RS10315 0.19 -0.2
2,293,105 + QEN71_RS10315 0.22 -0.7
2,293,181 + QEN71_RS10315 0.26 +1.0
2,293,201 + QEN71_RS10315 0.27 -0.1

Or see this region's nucleotide sequence