Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09175

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09165 and QEN71_RS09170 are separated by 44 nucleotidesQEN71_RS09170 and QEN71_RS09175 are separated by 175 nucleotidesQEN71_RS09175 and QEN71_RS09180 are separated by 115 nucleotidesQEN71_RS09180 and QEN71_RS09185 are separated by 122 nucleotides QEN71_RS09165: QEN71_RS09165 - hypothetical protein, at 2,050,280 to 2,051,293 _RS09165 QEN71_RS09170: QEN71_RS09170 - hypothetical protein, at 2,051,338 to 2,051,565 _RS09170 QEN71_RS09175: QEN71_RS09175 - hypothetical protein, at 2,051,741 to 2,051,953 _RS09175 QEN71_RS09180: QEN71_RS09180 - RNA-binding protein, at 2,052,069 to 2,052,326 _RS09180 QEN71_RS09185: QEN71_RS09185 - polyphosphate kinase 2, at 2,052,449 to 2,053,246 _RS09185 Position (kb) 2051 2052Strain fitness (log2 ratio) -1 0 1 2at 2050.910 kb on - strand, within QEN71_RS09165at 2051.090 kb on + strand, within QEN71_RS09165at 2051.090 kb on + strand, within QEN71_RS09165at 2051.091 kb on - strand, within QEN71_RS09165at 2051.091 kb on - strand, within QEN71_RS09165at 2051.119 kb on + strand, within QEN71_RS09165at 2051.120 kb on - strand, within QEN71_RS09165at 2051.262 kb on + strandat 2051.263 kb on - strandat 2051.263 kb on - strandat 2051.263 kb on - strandat 2051.266 kb on + strandat 2051.266 kb on + strandat 2051.292 kb on - strandat 2051.292 kb on - strandat 2051.580 kb on - strandat 2051.617 kb on - strandat 2051.670 kb on + strandat 2051.671 kb on - strandat 2051.761 kb on + strandat 2051.837 kb on + strand, within QEN71_RS09175at 2051.916 kb on - strand, within QEN71_RS09175at 2051.981 kb on - strandat 2052.183 kb on - strand, within QEN71_RS09180at 2052.263 kb on + strand, within QEN71_RS09180at 2052.263 kb on + strand, within QEN71_RS09180at 2052.263 kb on + strand, within QEN71_RS09180at 2052.457 kb on + strandat 2052.704 kb on + strand, within QEN71_RS09185at 2052.704 kb on + strand, within QEN71_RS09185at 2052.704 kb on + strand, within QEN71_RS09185at 2052.704 kb on + strand, within QEN71_RS09185at 2052.704 kb on + strand, within QEN71_RS09185at 2052.705 kb on - strand, within QEN71_RS09185at 2052.705 kb on - strand, within QEN71_RS09185at 2052.717 kb on - strand, within QEN71_RS09185

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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2,050,910 - QEN71_RS09165 0.62 +0.5
2,051,090 + QEN71_RS09165 0.80 +0.7
2,051,090 + QEN71_RS09165 0.80 -0.5
2,051,091 - QEN71_RS09165 0.80 -1.2
2,051,091 - QEN71_RS09165 0.80 +0.5
2,051,119 + QEN71_RS09165 0.83 -0.7
2,051,120 - QEN71_RS09165 0.83 -1.0
2,051,262 + +0.1
2,051,263 - +0.4
2,051,263 - -0.0
2,051,263 - +0.4
2,051,266 + +0.2
2,051,266 + -0.4
2,051,292 - -0.5
2,051,292 - -1.3
2,051,580 - +0.7
2,051,617 - -0.0
2,051,670 + -0.3
2,051,671 - +0.4
2,051,761 + +2.2
2,051,837 + QEN71_RS09175 0.45 -1.4
2,051,916 - QEN71_RS09175 0.82 +0.4
2,051,981 - -0.9
2,052,183 - QEN71_RS09180 0.44 -0.6
2,052,263 + QEN71_RS09180 0.75 -0.2
2,052,263 + QEN71_RS09180 0.75 +0.6
2,052,263 + QEN71_RS09180 0.75 -0.1
2,052,457 + -0.2
2,052,704 + QEN71_RS09185 0.32 -1.3
2,052,704 + QEN71_RS09185 0.32 +1.1
2,052,704 + QEN71_RS09185 0.32 +0.3
2,052,704 + QEN71_RS09185 0.32 +0.3
2,052,704 + QEN71_RS09185 0.32 -0.5
2,052,705 - QEN71_RS09185 0.32 -0.5
2,052,705 - QEN71_RS09185 0.32 -1.2
2,052,717 - QEN71_RS09185 0.34 -0.1

Or see this region's nucleotide sequence