Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06835

Experiment: Filtered_supernatant_MT81_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06830 and QEN71_RS06835 are separated by 131 nucleotides QEN71_RS06830: QEN71_RS06830 - ParB/RepB/Spo0J family partition protein, at 1,510,963 to 1,513,209 _RS06830 QEN71_RS06835: QEN71_RS06835 - DUF932 domain-containing protein, at 1,513,341 to 1,514,174 _RS06835 Position (kb) 1513 1514 1515Strain fitness (log2 ratio) -2 -1 0 1 2at 1512.368 kb on + strand, within QEN71_RS06830at 1512.369 kb on - strand, within QEN71_RS06830at 1512.369 kb on - strand, within QEN71_RS06830at 1512.369 kb on - strand, within QEN71_RS06830at 1512.428 kb on + strand, within QEN71_RS06830at 1512.429 kb on - strand, within QEN71_RS06830at 1512.546 kb on + strand, within QEN71_RS06830at 1512.546 kb on + strand, within QEN71_RS06830at 1512.546 kb on + strand, within QEN71_RS06830at 1512.546 kb on + strand, within QEN71_RS06830at 1512.669 kb on + strand, within QEN71_RS06830at 1512.707 kb on + strand, within QEN71_RS06830at 1513.035 kb on + strandat 1513.070 kb on + strandat 1513.071 kb on - strandat 1513.071 kb on - strandat 1513.224 kb on - strandat 1513.342 kb on + strandat 1513.343 kb on - strandat 1513.479 kb on + strand, within QEN71_RS06835at 1513.480 kb on - strand, within QEN71_RS06835at 1513.480 kb on - strand, within QEN71_RS06835at 1513.499 kb on + strand, within QEN71_RS06835at 1513.793 kb on + strand, within QEN71_RS06835at 1513.816 kb on + strand, within QEN71_RS06835at 1513.817 kb on - strand, within QEN71_RS06835at 1513.830 kb on + strand, within QEN71_RS06835at 1513.830 kb on + strand, within QEN71_RS06835at 1513.831 kb on - strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.035 kb on + strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.036 kb on - strand, within QEN71_RS06835at 1514.041 kb on + strand, within QEN71_RS06835at 1514.041 kb on + strand, within QEN71_RS06835at 1514.042 kb on - strand, within QEN71_RS06835at 1514.602 kb on + strandat 1514.603 kb on - strandat 1514.603 kb on - strandat 1514.660 kb on + strandat 1514.660 kb on + strandat 1514.660 kb on + strandat 1514.660 kb on + strandat 1514.661 kb on - strandat 1514.661 kb on - strandat 1514.661 kb on - strandat 1514.661 kb on - strandat 1514.661 kb on - strandat 1514.661 kb on - strandat 1514.667 kb on + strandat 1514.668 kb on - strandat 1514.668 kb on - strandat 1514.668 kb on - strandat 1514.668 kb on - strandat 1514.668 kb on - strandat 1514.668 kb on - strandat 1514.741 kb on + strandat 1514.753 kb on - strandat 1514.768 kb on + strandat 1514.768 kb on + strandat 1514.768 kb on + strandat 1514.768 kb on + strandat 1514.768 kb on + strandat 1514.769 kb on - strandat 1514.835 kb on + strandat 1514.856 kb on + strandat 1514.857 kb on - strandat 1514.913 kb on + strandat 1514.913 kb on + strandat 1514.913 kb on + strandat 1514.995 kb on - strandat 1515.159 kb on + strandat 1515.160 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Filtered_supernatant_MT81_in_LB
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1,512,368 + QEN71_RS06830 0.63 +0.1
1,512,369 - QEN71_RS06830 0.63 -0.5
1,512,369 - QEN71_RS06830 0.63 +0.1
1,512,369 - QEN71_RS06830 0.63 +0.5
1,512,428 + QEN71_RS06830 0.65 -1.0
1,512,429 - QEN71_RS06830 0.65 +1.6
1,512,546 + QEN71_RS06830 0.70 -0.2
1,512,546 + QEN71_RS06830 0.70 +1.7
1,512,546 + QEN71_RS06830 0.70 -1.3
1,512,546 + QEN71_RS06830 0.70 -1.1
1,512,669 + QEN71_RS06830 0.76 -1.5
1,512,707 + QEN71_RS06830 0.78 -0.8
1,513,035 + -0.9
1,513,070 + +0.0
1,513,071 - +0.5
1,513,071 - -0.2
1,513,224 - -0.7
1,513,342 + -0.4
1,513,343 - +0.5
1,513,479 + QEN71_RS06835 0.17 +0.4
1,513,480 - QEN71_RS06835 0.17 -0.8
1,513,480 - QEN71_RS06835 0.17 +0.6
1,513,499 + QEN71_RS06835 0.19 +1.2
1,513,793 + QEN71_RS06835 0.54 -1.5
1,513,816 + QEN71_RS06835 0.57 -0.2
1,513,817 - QEN71_RS06835 0.57 +0.9
1,513,830 + QEN71_RS06835 0.59 +0.4
1,513,830 + QEN71_RS06835 0.59 +0.0
1,513,831 - QEN71_RS06835 0.59 -0.6
1,514,035 + QEN71_RS06835 0.83 -0.3
1,514,035 + QEN71_RS06835 0.83 -0.7
1,514,035 + QEN71_RS06835 0.83 +0.6
1,514,035 + QEN71_RS06835 0.83 -1.3
1,514,035 + QEN71_RS06835 0.83 -0.2
1,514,035 + QEN71_RS06835 0.83 -0.3
1,514,035 + QEN71_RS06835 0.83 -0.1
1,514,035 + QEN71_RS06835 0.83 -0.0
1,514,035 + QEN71_RS06835 0.83 +0.5
1,514,035 + QEN71_RS06835 0.83 -0.5
1,514,035 + QEN71_RS06835 0.83 +0.9
1,514,035 + QEN71_RS06835 0.83 -0.1
1,514,035 + QEN71_RS06835 0.83 -0.9
1,514,035 + QEN71_RS06835 0.83 +0.0
1,514,035 + QEN71_RS06835 0.83 +1.3
1,514,035 + QEN71_RS06835 0.83 +0.0
1,514,035 + QEN71_RS06835 0.83 -0.6
1,514,035 + QEN71_RS06835 0.83 -0.1
1,514,035 + QEN71_RS06835 0.83 -1.1
1,514,035 + QEN71_RS06835 0.83 -0.3
1,514,036 - QEN71_RS06835 0.83 +0.8
1,514,036 - QEN71_RS06835 0.83 -0.2
1,514,036 - QEN71_RS06835 0.83 -1.8
1,514,036 - QEN71_RS06835 0.83 +1.6
1,514,036 - QEN71_RS06835 0.83 -0.5
1,514,036 - QEN71_RS06835 0.83 +0.9
1,514,036 - QEN71_RS06835 0.83 +0.8
1,514,036 - QEN71_RS06835 0.83 -0.9
1,514,036 - QEN71_RS06835 0.83 +0.1
1,514,036 - QEN71_RS06835 0.83 -1.1
1,514,036 - QEN71_RS06835 0.83 +1.2
1,514,036 - QEN71_RS06835 0.83 -0.6
1,514,036 - QEN71_RS06835 0.83 +1.3
1,514,036 - QEN71_RS06835 0.83 +0.7
1,514,036 - QEN71_RS06835 0.83 +0.5
1,514,036 - QEN71_RS06835 0.83 -0.1
1,514,036 - QEN71_RS06835 0.83 +0.1
1,514,041 + QEN71_RS06835 0.84 -0.3
1,514,041 + QEN71_RS06835 0.84 +0.3
1,514,042 - QEN71_RS06835 0.84 +1.0
1,514,602 + -0.1
1,514,603 - -1.0
1,514,603 - -0.8
1,514,660 + -1.8
1,514,660 + -0.4
1,514,660 + +0.0
1,514,660 + -2.6
1,514,661 - -0.2
1,514,661 - -0.8
1,514,661 - +0.0
1,514,661 - +0.4
1,514,661 - +1.2
1,514,661 - -0.6
1,514,667 + +1.0
1,514,668 - +1.0
1,514,668 - -0.4
1,514,668 - -0.1
1,514,668 - +0.6
1,514,668 - -0.3
1,514,668 - -1.5
1,514,741 + +0.7
1,514,753 - +2.3
1,514,768 + -0.6
1,514,768 + -1.8
1,514,768 + +0.8
1,514,768 + -0.6
1,514,768 + -0.2
1,514,769 - -0.5
1,514,835 + -0.1
1,514,856 + +0.0
1,514,857 - +1.0
1,514,913 + +0.2
1,514,913 + -0.7
1,514,913 + -0.4
1,514,995 - +0.4
1,515,159 + -0.2
1,515,160 - +0.1

Or see this region's nucleotide sequence